Construct: ORF ccsbBroad304_07336
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009389.1_s304c1, BRDN0000409308
- Derived from:
- ccsbBroadEn_07336
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAF1C (9013)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07336
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_139353.3 | 99.7% | 99.7% | (many diffs) |
| 2 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_017023847.1 | 99.6% | 99.6% | (many diffs) |
| 3 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_005256227.3 | 96.4% | 96.2% | (many diffs) |
| 4 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_017023846.1 | 96.4% | 96.2% | (many diffs) |
| 5 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_001243156.2 | 91.7% | 91.6% | (many diffs) |
| 6 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_017023845.1 | 91.7% | 91.6% | (many diffs) |
| 7 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_006721326.3 | 91.6% | 91.5% | (many diffs) |
| 8 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_005679.4 | 88.9% | 88.8% | (many diffs) |
| 9 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_005256226.3 | 88.9% | 88.8% | (many diffs) |
| 10 | human | 9013 | TAF1C | TATA-box binding protein as... | XM_006721325.3 | 88.8% | 88.7% | (many diffs) |
| 11 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_001243157.1 | 68.9% | 68.9% | (many diffs) |
| 12 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_001243158.2 | 68.9% | 68.9% | (many diffs) |
| 13 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_001243159.2 | 59% | 59% | (many diffs) |
| 14 | human | 9013 | TAF1C | TATA-box binding protein as... | NM_001243160.2 | 50.4% | 50.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2391
- ORF length:
- 2325
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgct gcctcccctc atcgatccct gggaccctgg cctgactgcc cgggacctgc 121 ttttccgcgg agggtaccgg tatcggaagc ggccccgagt cgtgctggat gtgactgagc 181 agatcagccg gttcctcttg gatcatggag acgtagcctt tgcgcccctg gggaagctga 241 tgctggagaa tttcaagctg gagggagcgg ggagccgcac taagaagaag acagtggtca 301 gtgtgaagaa gctgctccag gacctcggtg gacaccagcc ctgggggtgt ccctgggctt 361 acctcagcaa ccgacagcgc cgcttctcta tcctcggggg ccccatcctg ggcacgtcgg 421 tggcgagcca cttggcagag ctgctgcacg aggagctggt gctgcggtgg gagcagctgc 481 ttctggatga ggcctgcact gggggcgcgc tggcctgggt tcctggaagg acaccccagt 541 tcgggcagct ggtctaccct gctggaggcg cccaggacag gctgcatttc caagaggtcg 601 ttctgacccc aggtgacaat ccccaattcc ttgggaaacc tggacgcatc cagctccagg 661 gacctgtccg gcaagtggtg acatgcaccg tccagggaga aactctgctg gccgtccgct 721 ctgactacca ctgtgccgtg tggaagtttg gtaaacagtg gcagccaacc cttctgcagg 781 cgatgcaggt ggagaaaggg gccacgggga tcagcctcag ccctcacctg cccggggagc 841 tggccatctg cagccgctcg ggagccgtct gcctgtggag ccctgaggat gggctgcggc 901 aaatctacag ggaccctgag accctcgtgt tccgggactc ctcttcgtgg cgttgggcag 961 acttcactgc gcaccctcgg gtgctgaccg tgggtgaccg caccggagtg aagatgctgg 1021 acactcaggg cccgccgggc tgtggtctgt tgctttttcg tttgggggca gaggcttcgt 1081 gccagaaagg ggaacgtgtc ctgcttaccc agtacctggg gcactccagc cccaaatgcc 1141 tcccccctac tcttcatctc gtctgtaccc agttctctct ctacctagtg gacgagcgcc 1201 ttcccctggt gccgatgctg aagtggaacc atggcctccc ctccccgctc ctgctggccc 1261 gactgctgcc tccgccccgg cccagctgcg tgcagcccct gctcctcgga ggccagggtg 1321 ggcagctgca gctgctgcac ctggcagaag gggcgtcggt gccccgcctg gcaggccccc 1381 cccagtctct tccttccagg atcgactccc tccctgcatt tcctctgctg gagcctaaga 1441 tccagtggcg gctgcaggag cgcctgaaag caccgaccat aggtctggct gccgtcgtcc 1501 cgcccatgcc ctcagcgccc acaccaggcc tggtgctctt ccagctctcg gcggcgggag 1561 atgtcttcta ccagcagctc cgcccccagg tggactccag cctccgcaga gatgctgggc 1621 ctcctggcga cacccaacct gactgccatg cccccacagc ttcctggacc tcccaggaca 1681 ctgccggctg cagccagtgg ctgaaggccc tgctaaaagt gcccctggct cctcctgtgt 1741 ggacagcacc caccttcacc caccgccaga tgctgggcag cacagagctg cggagggagg 1801 aagaggaagg gcagcggctg ggtgtactcc gcaaggccat ggcccgaggg cagctcctgc 1861 tgcagagaga cctgggctcc ctccctgcgg cagagccacc ccctgcaccc gagtcaggcc 1921 tagaggacaa gctcagtgag cgcctggggg aagcctgggc aggccgaggg gctgcctggt 1981 gggagaggca gcagggcagg acctcggagc ccgggagaca gaccaggcgg cccaagcgcc 2041 ggacccagct gtccagcagc ttttcgctca gtggccatgt ggatccctca gaggacacca 2101 gctcccctca tagccctgag tggccacctg ctgatgctct gcccctgccc cccacgaccc 2161 cgccctccca ggagttgact ccggatgcat gcgcccaggg cgtcccatca gagcagcggc 2221 agatgctccg tgactacatg gccaagctac caccccagag ggacacccca ggctgtgcca 2281 ccacacctcc ccactcccag gcctccagcg tccgggccac tcgctcccag cagcacacac 2341 ccgtcctctc tagctctcag cccctccgta agaagcctcg aatgggcttc tgcccaactt 2401 tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt 2461 agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta