Construct: ORF ccsbBroad304_07483

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004852.1_s304c1, BRDN0000462303
Derived from:
ccsbBroadEn_07483
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIAA0232 (9778)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07483
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9778 KIAA0232 KIAA0232 NM_001100590.1 99.9% 99.8% 1605T>A;1860C>A
2 human 9778 KIAA0232 KIAA0232 NM_014743.3 99.9% 99.8% 1605T>A;1860C>A
3 human 9778 KIAA0232 KIAA0232 XM_017008860.2 98.2% 98.1% 1605T>A;1860C>A;3802_3873del
4 human 9778 KIAA0232 KIAA0232 XM_024454289.1 98.2% 98.1% 1605T>A;1860C>A;3802_3873del
5 human 9778 KIAA0232 KIAA0232 XM_024454291.1 93.7% 93.2% (many diffs)
6 human 9778 KIAA0232 KIAA0232 XM_017008861.1 92.1% 91.6% (many diffs)
7 human 9778 KIAA0232 KIAA0232 XM_011513598.3 90.7% 90.6% (many diffs)
8 human 9778 KIAA0232 KIAA0232 XM_024454290.1 90.7% 90.6% (many diffs)
9 human 9778 KIAA0232 KIAA0232 XM_005248041.5 90.1% 89.5% (many diffs)
10 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... NM_001081232.3 88.1% 88.2% (many diffs)
11 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240748.2 87.6% 87.7% (many diffs)
12 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240747.2 86.8% 86.9% (many diffs)
13 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_006503992.2 86.7% 86.8% (many diffs)
14 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240742.2 86.2% 86.3% (many diffs)
15 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240743.2 86.2% 86.3% (many diffs)
16 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240744.2 86.2% 86.3% (many diffs)
17 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240745.2 86.2% 86.3% (many diffs)
18 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240746.2 86.2% 86.3% (many diffs)
19 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240750.2 82.3% 82.5% (many diffs)
20 mouse 320661 D5Ertd579e DNA segment, Chr 5, ERATO D... XM_011240749.2 81% 81.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4254
ORF length:
4185
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtaccctatc tgtacagttg ttgtggatgg tttgccatct gaaagctcct
121caagttctta tccaggccct gtgtctgttt ctgaaatgtc tctgcttcat gctttgggtc
181cagtgcagac ctggctggga caagagctcg agaaatgtgg cattgatgcc atgatttaca
241ctcggtatgt cctcagtctt ctgctgcatg acagctatga ctacgacctg caggaacagg
301agaatgacat cttcctgggc tgggaaaaag gagcttataa gaaatgggga aagagtaaga
361aaaaatgttc agatctaact ctagaagaaa tgaaaaaaca ggctgctgtc cagtgtcttc
421gatctgcttc tgatgaaagc tctggtatcg agactttagt ggaggagctc tgctccagac
481tgaaagacct tcagagtaag caagaagaga agattcacaa aaagttagag gggtctccct
541ctccagaggc agaattatcc cctccagcaa aggatcaagt ggaaatgtac tatgaagcat
601ttccaccact ttctgagaaa ccagtttgcc tgcaagaaat catgactgtg tggaacaagt
661ctaaagtctg ttcttactct agctcttctt catcatccac agccccacca gctagcacag
721atacttcctc tcctaaggac tgcaacagtg aaagtgaagt caccaaggaa agaagcagtg
781aagtacccac cactgtgcat gagaaaaccc agagcaaaag caaaaacgag aaggaaaaca
841aatttagtaa tggcacaatt gaagaaaagc ctgctttgta caaaaagcaa atccgacata
901aacctgaagg aaagattcgc cctcgctcgt ggtcttctgg ctccagtgaa gcaggctcaa
961gttccagtgg gaatcaggga gaattaaaag catccatgaa gtatgttaaa gtaagacaca
1021aggcacgaga gattcgaaac aaaaaagggc ggaatgggca aagcaggctt tctttgaagc
1081acggtgaaaa ggctgaaagg aacattcata ctggaagtag tagcagtagc agcagtggtt
1141ctgtcaaaca gctgtgcaag cggggtaaga gacctttaaa agaaataggg agaaaagatc
1201ctgggagcac tgaaggaaaa gacctgtaca tggagaatag aaaggacaca gagtataaag
1261aggagccctt gtggtacacc gagccaattg ctgaatattt tgttcctctg agcagaaaaa
1321gtaaactaga gaccacatac cgaaacagac aggatacaag tgatctgaca tcagaggcag
1381tggaagaatt gtctgaatca gtgcatggtc tttgtatcag caacaataat cttcataaaa
1441catacctcgc agcaggtact ttcattgatg gtcattttgt agaaatgcct gcagttataa
1501atgaggatat tgacctcact gggacctcat tatgttctct accagaggac aataaatacc
1561tggatgatat tcatctatca gaattaacgc acttctatga agtggatatt gatcaatcca
1621tgttggatcc tggtgcctca gaaacaatgc aaggagaaag tcggattttg aaaatgattc
1681gacagaaaag caaagagaac acagattttg aggcagaatg ttgcatagtg ttagatggta
1741tggagttgca aggggaacgt gcaatatgga cagattctac cagctccgta ggtgctgagg
1801gcttattcct gcaggacctt ggcaatctgg ctcagttttg ggagtgctgt tcatccagct
1861ccggtgatgc tgatggggag agttttggag gagactctcc agttagactc tctcccatct
1921tagacagaac agtgctcaat tcacacctgc ttgctggcaa tcaagagctc ttttcagata
1981ttaatgaagg atctggtata aactcttgtt tttcagtgtt tgaagtgcaa tgcagtaatt
2041ctgttttacc attttctttt gaaacactca acttgggaaa tgaaaataca gattctagtg
2101ctaatatgct tgggaaaaca cagtctagat tgctaatatg gaccaaaaat agtgcctttg
2161aagaaaatga acactgttct aatctttcaa caagaacttg tagtccatgg tcccattcag
2221aagaaacacg ttcagacaat gaaacattaa atattcagtt tgaagaatcc acacagttta
2281atgccgaaga tattaattat gtagttccta gagtctcgtc aaattatgta gatgaagaac
2341ttctagattt tttgcaagat gaaacttgcc agcaaaacag tagaacttta ggtgagattc
2401ctacattagt tttcaaaaaa acatctaaac tagaatccgt ctgtggtatt cagctagaac
2461aaaaaacaga aaacaaaaat tttgaaacta cacaagtatg taatgaaagt ccacatggag
2521atggctacag ctcaggggtt attaaagaca tttggacaaa gatggcagac acaaattctg
2581tggctacagt agaaatagaa agaactgatg ctgagttgtt ttcggcagat gtaaataact
2641actgctgctg tctagatgct gaagctgaac tggagaccct tcaggagcct gataaggctg
2701tgcggaggtc agagtaccat ctgtgggagg gacagaaaga gagcctggag aaaagagcat
2761ttgcttctag tgagctatca aacgtggatg gtggtgatta tacaacaccc tctaaaccct
2821gggatgtagc ccaagataaa gaaaacacat tcattcttgg aggagtttat ggagaactca
2881aaaccttcaa tagtgatggg gagtgggcag tcgtaccacc tagtcacaca aaaggaagtc
2941tgttacagtg tgcagcttct gatgttgtga cgatagctgg tacagatgtc tttatgaccc
3001caggaaacag ttttgctcct gggcacaggc agttatggaa acccttcgtg tcatttgaac
3061agaatgatca gccgaagagt ggggaaaatg ggttaaataa gggattttct tttatcttcc
3121atgaagactt actaggagct tgtggcaact ttcaagtcga agatcctgga cttgaatact
3181cattttcttc ctttgactta agcaatccat tttcacaagt tcttcatgta gaatgctcat
3241ttgaacctga agggattgca tctttcagcc ccagttttaa accgaaatca atcctctgtt
3301ctgattcaga cagtgaagtg tttcacccca ggatatgtgg tgttgacaga acacaataca
3361gggctattcg gatctctcct cggactcact ttcgcccaat ttctgcatcc gaactgtccc
3421caggaggagg aagcgagtca gaatttgaat ctgagaaaga tgaagcaaat attcccattc
3481cttctcaagt tgatatattt gaagatccgc aggcagatct caaacctttg gaagaagatg
3541cagagaaaga aggccattac tatggaaaat cagagcttga gtctggaaaa ttccttccca
3601ggttaaaaaa atctgggatg gaaaagagtg ctcagacatc actggattcc caggaggaat
3661caactgggat tctttcagta ggaaagcaaa atcagtgttt ggaatgtagc atgaatgaat
3721ccctggaaat agatttagaa agctcagaag caaattgtaa aataatggca caatgcgagg
3781aagaaattaa taatttttgt ggttgcaaag caggttgtca gtttcctgct tatgaagata
3841atccagtttc ttcgggacag ctggaagagt tccctgtatt gaacactgat atacaaggaa
3901tgaatagaag tcaagaaaaa cagacctggt gggaaaaagc cttgtactct cctctttttc
3961ctgcatcaga gtgtgaagaa tgttacacaa atgccaaggg agagagtggt ttagaagaat
4021atccagatgc taaagagaca cccagtaatg aagagcgcct gttagatttt aatagggtgt
4081cttctgttta tgaagcaaga tgtacaggag agagagattc tggagcaaag tcagatggct
4141tccgcggaaa gatgtgctcc agcgccagct ccacctcgga agagacaggc tcagaaggcg
4201gaggcgagtg ggtgggccct agtgaagagg agctcttttc tcgaactcat ctcttgccaa
4261ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
4321cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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