Construct: ORF ccsbBroad304_07506

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015689.1_s304c1, BRDN0000405012
Derived from:
ccsbBroadEn_07506
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBAP2L (9898)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07506
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9898 UBAP2L ubiquitin associated protei... NM_014847.4 99.9% 99.9% 1446G>C
2 human 9898 UBAP2L ubiquitin associated protei... XM_017002978.1 99.9% 99.9% 1446G>C
3 human 9898 UBAP2L ubiquitin associated protei... XM_017002979.1 99.9% 99.9% 1446G>C
4 human 9898 UBAP2L ubiquitin associated protei... XM_017002977.2 99.8% 99.8% 1446G>C;2967_2968insCAG
5 human 9898 UBAP2L ubiquitin associated protei... XM_017002980.2 99.8% 99.8% 1446G>C;2967_2968insCAG
6 human 9898 UBAP2L ubiquitin associated protei... XM_017002981.2 99.8% 99.8% 1446G>C;2967_2968insCAG
7 human 9898 UBAP2L ubiquitin associated protei... XM_005245667.4 98.9% 98.8% 449_481del;1479G>C
8 human 9898 UBAP2L ubiquitin associated protei... XM_017002976.1 98.9% 98.8% 449_481del;1479G>C
9 human 9898 UBAP2L ubiquitin associated protei... XM_017002975.2 98.8% 98.7% 449_481del;1479G>C;3000_3001insCAG
10 human 9898 UBAP2L ubiquitin associated protei... XM_011510216.2 98.4% 98.3% 1446G>C;3166_3216del
11 human 9898 UBAP2L ubiquitin associated protei... XM_017002973.2 98.3% 98.2% 1446G>C;2967_2968insCAG;3163_3213del
12 human 9898 UBAP2L ubiquitin associated protei... XM_017002974.1 98.3% 98.2% 1446G>C;2967_2968insCAG;3163_3213del
13 human 9898 UBAP2L ubiquitin associated protei... XM_017002983.1 98% 96.6% (many diffs)
14 human 9898 UBAP2L ubiquitin associated protei... XM_017002982.2 97.9% 96.5% (many diffs)
15 human 9898 UBAP2L ubiquitin associated protei... XM_017002984.1 97.9% 96.5% (many diffs)
16 human 9898 UBAP2L ubiquitin associated protei... XM_017002986.2 97.7% 96.3% (many diffs)
17 human 9898 UBAP2L ubiquitin associated protei... XM_017002987.1 97.7% 96.3% (many diffs)
18 human 9898 UBAP2L ubiquitin associated protei... XM_005245672.4 97.6% 96.2% (many diffs)
19 human 9898 UBAP2L ubiquitin associated protei... XM_017002988.1 97.6% 96.2% (many diffs)
20 human 9898 UBAP2L ubiquitin associated protei... XM_005245658.4 97.4% 97.3% 449_481del;1479G>C;3199_3249del
21 human 9898 UBAP2L ubiquitin associated protei... XM_011510215.3 97.3% 97.2% (many diffs)
22 human 9898 UBAP2L ubiquitin associated protei... XM_017002972.2 97.3% 97.2% (many diffs)
23 human 9898 UBAP2L ubiquitin associated protei... XM_005245668.4 97% 95.5% (many diffs)
24 human 9898 UBAP2L ubiquitin associated protei... XM_005245669.4 96.9% 95.4% (many diffs)
25 human 9898 UBAP2L ubiquitin associated protei... NM_001330730.1 96.7% 95.3% (many diffs)
26 human 9898 UBAP2L ubiquitin associated protei... XM_017002985.2 96.7% 95.3% (many diffs)
27 human 9898 UBAP2L ubiquitin associated protei... NM_001287816.1 96.6% 95.2% (many diffs)
28 human 9898 UBAP2L ubiquitin associated protei... NM_001127320.2 89.9% 89.5% (many diffs)
29 human 9898 UBAP2L ubiquitin associated protei... XM_005245674.2 89.9% 89.5% (many diffs)
30 human 9898 UBAP2L ubiquitin associated protei... XM_017002989.1 89.9% 89.5% (many diffs)
31 human 9898 UBAP2L ubiquitin associated protei... XM_017002990.1 89.9% 89.5% (many diffs)
32 human 9898 UBAP2L ubiquitin associated protei... NM_001287815.1 89.2% 88.7% (many diffs)
33 human 9898 UBAP2L ubiquitin associated protei... XM_005245673.4 89% 88.5% (many diffs)
34 human 9898 UBAP2L ubiquitin associated protei... XM_024451291.1 78.2% 76.9% (many diffs)
35 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319762.1 94.3% 98.1% (many diffs)
36 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319763.1 94.2% 98% (many diffs)
37 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319759.1 93.4% 97% (many diffs)
38 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319760.1 93.3% 96.9% (many diffs)
39 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319757.1 92.9% 96.6% (many diffs)
40 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319758.1 92.8% 96.5% (many diffs)
41 mouse 74383 Ubap2l ubiquitin-associated protei... NM_001165984.1 92.6% 96.2% (many diffs)
42 mouse 74383 Ubap2l ubiquitin-associated protei... NM_001165983.1 92.2% 95.8% (many diffs)
43 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502172.2 92.2% 95.8% (many diffs)
44 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319756.1 91.9% 95.6% (many diffs)
45 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319755.1 91.7% 95.2% (many diffs)
46 mouse 74383 Ubap2l ubiquitin-associated protei... NM_153489.2 91.5% 94.5% (many diffs)
47 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502169.2 91.3% 94.8% (many diffs)
48 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502167.3 91.2% 94.8% (many diffs)
49 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502168.2 91.2% 94.8% (many diffs)
50 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319754.1 91.2% 94.7% (many diffs)
51 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502164.3 90.8% 94.4% (many diffs)
52 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502165.3 90.8% 94.4% (many diffs)
53 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502166.2 90.8% 94.4% (many diffs)
54 mouse 74383 Ubap2l ubiquitin-associated protei... NM_028475.2 90.6% 92.9% (many diffs)
55 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502163.3 90.3% 93.8% (many diffs)
56 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502156.3 89.9% 93.4% (many diffs)
57 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502157.3 89.9% 93.4% (many diffs)
58 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502158.2 89.9% 93.4% (many diffs)
59 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502160.3 89.9% 93.4% (many diffs)
60 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502161.2 89.9% 93.4% (many diffs)
61 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502162.3 89.8% 93.3% (many diffs)
62 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502170.2 89.3% 91.5% (many diffs)
63 mouse 74383 Ubap2l ubiquitin-associated protei... NM_001165987.1 84.6% 87.7% (many diffs)
64 mouse 74383 Ubap2l ubiquitin-associated protei... NM_001165988.1 84.6% 87.7% (many diffs)
65 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319767.1 84.5% 77.2% (many diffs)
66 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319766.1 84.1% 76.2% (many diffs)
67 mouse 74383 Ubap2l ubiquitin-associated protei... XM_011240248.2 83.8% 86.7% (many diffs)
68 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319765.1 83.3% 76.1% (many diffs)
69 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319764.1 82.6% 75.2% (many diffs)
70 mouse 74383 Ubap2l ubiquitin-associated protei... NM_001165985.1 82.3% 85.1% (many diffs)
71 mouse 74383 Ubap2l ubiquitin-associated protei... NM_001165986.1 82.3% 85.1% (many diffs)
72 mouse 74383 Ubap2l ubiquitin-associated protei... XM_006502186.2 81.9% 84.7% (many diffs)
73 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319761.1 81.8% 75.1% (many diffs)
74 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319768.1 81.3% 84.2% (many diffs)
75 mouse 74383 Ubap2l ubiquitin-associated protei... XM_011240246.2 81.1% 84.1% (many diffs)
76 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319769.1 74.6% 70.7% (many diffs)
77 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319771.1 73.3% 74.6% (many diffs)
78 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319770.1 72.1% 74.9% (many diffs)
79 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319772.1 67.4% 70.2% (many diffs)
80 mouse 74383 Ubap2l ubiquitin-associated protei... XM_017319773.1 67.3% 70.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3327
ORF length:
3261
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat gacatcggtg ggcactaacc gagcccgggg aaactgggaa caacctcaaa
121accaaaacca gacacagcac aagcagcggc cacaggccac tgcagaacaa attagacttg
181cacagatgat ttcggaccat aatgatgctg actttgagga gaaggtgaaa caattgattg
241atattacagg caagaaccag gatgaatgtg tgattgcttt gcatgactgc aatggagatg
301tcaacagagc tatcaatgtt cttctggaag gaaacccaga cacgcattcc tgggagatgg
361tcgggaagaa gaagggagtc tcaggccaga aggatggtgg ccagacggaa tccaatgagg
421aaggcaaaga aaatcgagac cgggacagag actatagtcg gcgacgtggt gggccaccaa
481gacgggggag aggtgccagc cgtggacgag agtttcgagg tcaggaaaat ggattggatg
541gcaccaagag tggagggcct tctggaagag gaacagaaag aggcagaagg ggccgtggcc
601gaggcagagg tggctctggt aggcgaggag gaaggttttc tgctcaagga atgggaacct
661ttaacccagc tgattatgca gagccagcca atactgatga taactatggc aatagcagcg
721gcaatacgtg gaacaacact ggccactttg aaccagatga tgggacgagt gcatggagga
781ctgcaacaga ggagtggggg actgaagatt ggaatgaaga tctttctgag accaagatct
841tcactgcctc taatgtgtct tcagtgcctc tgcctgcgga gaatgtgaca atcactgctg
901gtcagagaat tgaccttgct gttctgctgg ggaagacacc atctacaatg gagaatgatt
961catctaatct ggatccgtct caggctcctt ctctggccca gcctctggtg ttcagtaatt
1021cgaagcagac tgccatatca cagcctgctt cagggaacac attttctcat cacagtatgg
1081tgagcatgtt agggaaagga tttggtgatg tcggtgaagc taaaggcggc agtactacag
1141gctcccagtt cttggagcaa ttcaagactg cccaagccct ggctcagttg gcagctcagc
1201attctcagtc tggaagcacc accacctcct cttgggacat gggctcgacg acacaatccc
1261catcactggt gcagtatgat ttgaagaacc caagtgattc agcagtgcac agccccttta
1321caaagcgcca ggcttttacc ccatcttcaa ccatgatgga ggtgttcctt caggagaagt
1381cacctgcagt ggctacctcc acagctgcac ctccacctcc gtcttctcct ctgccaagca
1441aatccacatc ggctccacag atgtcgcctg gatcttcaga caaccagtcc tctagccctc
1501agccggctca ccagaaactg aaacagcaga agaaaaaagc ctccttgact tctaagattc
1561ctgctctggc tgtggagatg cctggctcag cagatatctc agggctaaac ctgcagtttg
1621gggcattgca gtttgggtca gagcctgtcc tttctgatta tgagtccacc cccaccacga
1681gcgcctcttc aagccaggct ccaagtagcc tgtataccag cacggccagt gaatcatcct
1741ctacaatttc atctaaccag agtcaggagt ctggttatca gagcggccca attcagtcga
1801caacctatac ctcccaaaat aatgctcagg gccctcttta tgaacagaga tccacacaga
1861ctcggcggta ccccagctcc atctcttcat caccccaaaa ggacctgact caggcaaaga
1921atggcttcag ttctgtgcag gccacgcagt tacagaccac acaatctgtt gaaggtgcta
1981caggctctgc agtgaaatct gattcacctt ccacttctag catcccccct ctcaatgaaa
2041cggtatctgc agcttcctta ctgacgacaa ccaatcagca ttcatcctcc ttgggtggct
2101tgagccacag tgaggagatt ccaaatacta ccaccacaca acacagcagc acgttatcta
2161cgcagcagaa taccctttca tcatcaacat cttctgggcg cacttcgaca tccactcttt
2221tgcacacaag tgtggagagt gaggcgaatc tccattcttc ctccagcact ttttccacca
2281catccagcac agtctctgca cctcccccag tggtcagtgt ctcctccagt ctcaatagtg
2341gcagtagcct gggcctcagc ctaggcagca actccactgt cacagcctcg actcgaagct
2401cagttgctac gacttcagga aaagctcctc ccaacctccc tcctggggtc ccgccgttgt
2461tgcctaatcc gtatattatg gctccagggc tgttacatgc ctacccgcca caagtatatg
2521gttatgatga cttgcagatg cttcagacaa gatttccatt ggattactac agcatcccat
2581ttcccacacc cactactccg ctgactggga gggatggtag cctggccagc aacccttatt
2641ctggtgacct cacaaagttc ggccgtgggg atgcctcctc cccagccccg gccacaacct
2701tggcccaacc ccaacagaac cagacgcaga ctcaccatac cacgcagcag acattcctga
2761acccggcgct gcctcctggc tacagttaca ccagcctgcc atactataca ggggtcccgg
2821gcctccccag caccttccag tatgggcctg ctgtgttccc tgtggctcct acctcttcca
2881agcagcatgg tgtgaatgtc agtgtgaatg catcggccac ccctttccaa cagccgagtg
2941gatatgggtc tcatggatac aacactggtg tttcagtcac ctccagtaac acgggcgtgc
3001cagatatctc gggttctgtg tactccaaaa cccagcagtc ctttgagaaa caaggttttc
3061attccggtac tcctgctgct tccttcaact tgccttcagc cctaggaagt gggggcccca
3121tcaatccggc cacagctgct gcctacccac ctgccccctt tatgcacatt ctgacccccc
3181atcagcagcc gcattctcag atccttcacc atcacctgca gcaggatggc cagacgggca
3241gcgggcaacg tagccagacc agctccatcc cgcagaagcc ccagaccaac aagtctgcct
3301acaacagcta cagctggggg gccaactgcc caactttctt gtacaaagtg gttggtaagc
3361ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
3421ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)