Construct: ORF ccsbBroad304_07767

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011672.1_s304c1, BRDN0000403727
Derived from:
ccsbBroadEn_07767
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PKP3 (11187)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07767
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11187 PKP3 plakophilin 3 NM_007183.4 99.8% 100% (many diffs)
2 human 11187 PKP3 plakophilin 3 NM_001303029.2 97.3% 96.6% (many diffs)
3 mouse 56460 Pkp3 plakophilin 3 NM_019762.2 86.7% 93.8% (many diffs)
4 mouse 56460 Pkp3 plakophilin 3 NM_001162924.1 83.8% 89.7% (many diffs)
5 mouse 56460 Pkp3 plakophilin 3 XM_017322376.1 78.6% 85.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2457
ORF length:
2391
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca ggacggtaac ttcctgctgt cggccctgca gcctgaggcc ggcgtgtgct
121ccctggcgct gccctctgac ctgcagctgg accgccgggg cgccgagggg ccggaggccg
181agcggctgcg ggcagcccgc gtccaggagc aggtccgcgc ccgcctcttg cagctgggac
241agcagccgcg gcacaacggg gccgctgagc ccgagcctga ggccgagact gccagaggca
301catccagggg gcagtaccac accctgcagg ctggcttcag ctctcgctct cagggcctga
361gtggggacaa gacctcgggc ttccggccca tcgccaagcc ggcctacagc ccagcctcct
421ggtcctcccg ctccgccgtg gatctgagct gcagtcggag gctgagttca gcccacaatg
481ggggcagcgc ctttggggcc gctgggtacg ggggtgccca gcccacccct cccatgccca
541ccaggcccgt gtccttccat gagcgcggtg gggttgggag ccgggccgac tatgacacac
601tctccctgcg ctcgctgcgg ctggggcccg ggggcctgga cgaccgctac agcctggtgt
661ctgagcagct ggagcccgcg gccacctcca cctacagggc ctttgcgtac gagcgccagg
721ccagctccag ctccagccgg gcaggggggc tggactggcc cgaggccact gaggtttccc
781cgagccggac catccgtgcc cctgccgtgc ggaccctgca gcgattccag agcagccacc
841ggagccgcgg ggtaggcggg gcagtgccgg gggccgtcct ggagccagtg gctcgagcgc
901catctgtgcg cagcctcagc ctcagcctgg ctgactcggg ccacctgccg gacgtgcatg
961ggttcaacag ctacggtagc caccgaaccc tgcagagact cagcagcggt tttgatgaca
1021ttgacctgcc ctcagcagtc aagtacctca tggcttcaga ccccaacctg caggtgctgg
1081gagcggccta catccagcac aagtgctaca gcgatgcagc cgccaagaag caggcccgca
1141gccttcaggc cgtgcctagg ctggtgaagc tcttcaacca cgccaaccag gaagtgcagc
1201gccatgccac aggtgccatg cgcaacctca tctacgacaa cgctgacaac aagctggccc
1261tggtggagga gaacgggatc ttcgagctgc tgcggacact gcgggagcag gatgatgagc
1321ttcgcaaaaa tgtcacaggg atcctgtgga acctttcatc cagcgaccac ctgaaggacc
1381gcctggccag agacacgctg gagcagctca cagacctggt gttgagcccc ctgtcggggg
1441ctgggggtcc ccccctcatc cagcagaacg cctcggaggc ggagatcttc tacaacgcca
1501ccggcttcct caggaacctc agctcagcct ctcaggccac tcgccagaag atgcgggagt
1561gccacgggct ggtggacgcc ctggtcacct ctatcaacca cgccctggac gcgggcaaat
1621gcgaggacaa gagcgtggag aacgcggtgt gcgtcctgcg gaacctgtcc taccgcctct
1681acgacgagat gccgccgtcc gcgctgcagc ggctggaggg tcgcggccgc agggacctgg
1741cgggggcgcc gccgggagag gtcgtgggct gcttcacgcc gcagagccgg cggctgcgcg
1801agctgcccct cgccgccgat gcgctcacct tcgcggaggt gtccaaggac cccaagggcc
1861tcgagtggct gtggagcccc cagatcgtgg ggctgtacaa ccggctgctg cagcgctgcg
1921agctcaaccg gcacacgacg gaggcggccg ccggggcgct gcagaacatc acggcaggcg
1981accgcaggtg ggcgggggtg ctgagccgcc tggccctgga gcaggagcgt attctgaacc
2041ccctgctaga ccgtgtcagg accgccgacc accaccagct gcgctcactg actggcctca
2101tccgaaacct gtctcggaac gctaggaaca aggacgagat gtccacgaag gtggtgagcc
2161acctgatcga gaagctgcca ggcagcgtgg gtgagaagtc gcccccagcc gaggtgctgg
2221tcaacatcat agctgtgctc aacaacctgg tggtggccag ccccatcgct gcccgagacc
2281tgctgtattt tgacggactc cgaaagctca tcttcatcaa gaagaagcgg gacagccccg
2341acagtgagaa gtcctcccgg gcagcatcca gcctcctggc caacctgtgg cagtacaaca
2401agctccaccg tgactttcgg gcgaagggct atcggaagga ggacttcctg ggcccatacc
2461caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
2521ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
2581tta

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