Construct: ORF ccsbBroad304_07843

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014350.1_s304c1, BRDN0000461745
Derived from:
ccsbBroadEn_07843
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FCHO1 (23149)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07843
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23149 FCHO1 FCH and mu domain containin... NM_001161358.2 99.8% 100% 903A>G;1152G>A;1899A>G
2 human 23149 FCHO1 FCH and mu domain containin... NM_015122.3 99.8% 100% 903A>G;1152G>A;1899A>G
3 human 23149 FCHO1 FCH and mu domain containin... XM_006722701.4 99.8% 100% 903A>G;1152G>A;1899A>G
4 human 23149 FCHO1 FCH and mu domain containin... XM_006722702.4 99.8% 100% 903A>G;1152G>A;1899A>G
5 human 23149 FCHO1 FCH and mu domain containin... XM_011527824.2 99.8% 100% 903A>G;1152G>A;1899A>G
6 human 23149 FCHO1 FCH and mu domain containin... XM_011527825.2 99.8% 100% 903A>G;1152G>A;1899A>G
7 human 23149 FCHO1 FCH and mu domain containin... XM_011527826.3 99.8% 100% 903A>G;1152G>A;1899A>G
8 human 23149 FCHO1 FCH and mu domain containin... XM_011527828.2 99.8% 100% 903A>G;1152G>A;1899A>G
9 human 23149 FCHO1 FCH and mu domain containin... XM_017026519.1 99.8% 100% 903A>G;1152G>A;1899A>G
10 human 23149 FCHO1 FCH and mu domain containin... XM_017026520.2 99.8% 100% 903A>G;1152G>A;1899A>G
11 human 23149 FCHO1 FCH and mu domain containin... XM_017026521.2 99.8% 100% 903A>G;1152G>A;1899A>G
12 human 23149 FCHO1 FCH and mu domain containin... XM_024451427.1 99.8% 100% 903A>G;1152G>A;1899A>G
13 human 23149 FCHO1 FCH and mu domain containin... XM_024451428.1 99.8% 100% 903A>G;1152G>A;1899A>G
14 human 23149 FCHO1 FCH and mu domain containin... NM_001161357.2 99% 99.1% (many diffs)
15 human 23149 FCHO1 FCH and mu domain containin... XM_017026522.1 95.5% 95.6% (many diffs)
16 human 23149 FCHO1 FCH and mu domain containin... XM_017026523.1 95.5% 95.6% (many diffs)
17 human 23149 FCHO1 FCH and mu domain containin... XM_017026524.2 95.5% 95.6% (many diffs)
18 human 23149 FCHO1 FCH and mu domain containin... XM_017026525.1 95.5% 95.6% (many diffs)
19 human 23149 FCHO1 FCH and mu domain containin... NM_001161359.2 94.2% 94.3% (many diffs)
20 human 23149 FCHO1 FCH and mu domain containin... XM_011527827.2 89.5% 89.6% (many diffs)
21 human 23149 FCHO1 FCH and mu domain containin... XM_017026526.1 89.5% 89.6% (many diffs)
22 human 23149 FCHO1 FCH and mu domain containin... XM_017026527.2 89.5% 89.6% (many diffs)
23 human 23149 FCHO1 FCH and mu domain containin... XM_017026528.1 89.5% 89.6% (many diffs)
24 human 23149 FCHO1 FCH and mu domain containin... XR_002958285.1 76.1% (many diffs)
25 human 23149 FCHO1 FCH and mu domain containin... XM_005259831.4 75.3% 69.5% (many diffs)
26 human 23149 FCHO1 FCH and mu domain containin... XM_024451429.1 75.3% 69.5% (many diffs)
27 human 23149 FCHO1 FCH and mu domain containin... XM_024451430.1 75.3% 69.5% (many diffs)
28 human 23149 FCHO1 FCH and mu domain containin... XM_024451431.1 45.6% 44.3% (many diffs)
29 mouse 74015 Fcho1 FCH domain only 1 NM_028715.3 81.3% 86.1% (many diffs)
30 mouse 74015 Fcho1 FCH domain only 1 XM_006509765.2 81.3% 86.1% (many diffs)
31 mouse 74015 Fcho1 FCH domain only 1 XM_006509766.3 81.3% 86.1% (many diffs)
32 mouse 74015 Fcho1 FCH domain only 1 XM_006509767.3 81.3% 86.1% (many diffs)
33 mouse 74015 Fcho1 FCH domain only 1 XM_011242331.2 76.3% 80.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2733
ORF length:
2667
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc gtattttggg gagcattttt ggggcgagaa aaatcatggc tttgaggtcc
121tgtaccacag cgtgaagcag gggcccatct ccaccaagga gctggcggac ttcatccggg
181agagggccac catcgaggag acctactcga aggcgatggc gaaactctcc aagctggcca
241gcaacgggac ccccatgggg accttcgccc cgctctggga ggtcttccgc gtctcctcgg
301acaagctggc gctgtgccac ctggaactga cacggaagtt acaggatctc atcaaggacg
361ttctccgcta cggcgaggaa cagctcaaga cccacaagaa gtgcaaggag gaagtggtga
421gcaccttgga tgctgtgcag gtactctcgg gcgtcagcca gctcctgccc aagtcccgcg
481agaactacct gaaccgttgc atggaccagg agcggctgcg gagggagagt accagccaga
541aggagatgga caaggcggag actaaaacca agaaggcggc agagagcctg cggcgctcag
601tggaaaaata caactcagcc cgagctgact ttgagcagaa gatgctggac tcagccctgc
661gcttccaagc catggaggag acacacctga ggcacatgaa ggcactgctg ggctcatatg
721ctcactcggt ggaggacacg cacgtgcaga ttgggcaggt gcatgaggaa tttaagcaga
781acatcgagaa cgtcagcgtg gagatgctac tcaggaagtt tgcagagagt aagggcacag
841gccgggagaa gcctggacct ctggacttcg aggcatacag tgcggctgcc ctgcaggaag
901cgatgaaacg tttgcgggga gccaaggcct ttcgccttcc aggactaagc cggcgggagc
961gggagccgga gccacctgca gctgtagatt tcctggagcc cgattcaggg acatgtccag
1021aggtggatga agaaggtttc actgtccggc ctgatgtgac ccagaacagc acggccgagc
1081cctcccgttt ctcgtccagc gactccgact tcgacgatga agagccccgc aagttctatg
1141tgcacatcaa gcctgccccg gcccgggctc cagcctgcag ccccgaggca gcagcggcac
1201agctcagggc caccgcaggc agcctcatcc ttcctcctgg cccagggggc accatgaaac
1261gccattcttc acgggacgct gctgggaaac cccagagacc tcggtctgcc cccagaacca
1321gcagctgtgc agagagattg cagtcagagg agcaggtgtc caagaacctc tttgggccgc
1381ccctggagtc agcctttgac cacgaagatt ttacaggctc tagcagcctg ggcttcacct
1441ccagcccctc ccctttctcc tcctcgtcgc ccgaaaacgt ggaggattcc ggcctggact
1501ctccgtccca cgcggcacct ggcccctccc cagattcctg ggtcccccgc ccaggcaccc
1561cgcagagccc gcccagctgt agggcgccac ccccagaggc caggggtatc cgggcaccgc
1621ctctgccaga ctcgccgcag cccctcgcct cgtctccagg cccctggggg ctggaggcct
1681tggccggagg agacctgatg cctgcacctg ctgaccccac agccagggag ggcctggcag
1741ccccacccag gagacttcgc tctaggaagg tgtcctgccc tctcacacgt agcaatgggg
1801acctgtctcg ttccctgagc ccctccccac tgggctcttc agccgccagc actgccttgg
1861aacggcccag cttcttatcc cagacaggac acggagtctc ccggggtccg agccctgtgg
1921tcctgggctc ccaggatgcc ctgcccatag ccacagcctt cacggagtat gtccacgcct
1981acttccgtgg ccacagcccc agctgcctgg ctcgagtaac tggggagctg accatgacct
2041tccctgctgg catcgtgcgt gtgttcagcg ggaccccacc accacctgtc ctcagcttcc
2101ggcttgtaca cacaaccgct attgagcact tccagcccaa cgccgatctg ctgttcagtg
2161acccctccca gagtgaccct gagaccaaag acttctggct caacatggca gctctgaccg
2221aagccctgca gcgccaggca gagcagaacc ccactgcctc ctactacaac gtggtgctgc
2281tgcgatacca gttctcccgc ccgggtcccc agtctgtgcc tctgcagctc agtgcccact
2341ggcagtgtgg agccaccctc acccaggtct cagtggagta cggctaccgg cccggtgcca
2401cggctgtgcc cacaccactc acgaacgtcc agatcctgct gcctgtgggg gagcctgtga
2461ccaacgtccg cttgcagccg gctgccacct ggaacctgga ggagaagcgg ctcacttgga
2521ggcttccaga tgtgtccgag gcaggcggtt ctggccgcct ctctgccagc tgggagccgc
2581tctcagggcc cagcacaccc agccccgtgg ctgcacagtt caccagcgag gggaccactc
2641tgtcgggcgt ggacttggaa ctggtgggca gcggttaccg catgtcgctg gtgaagagga
2701ggtttgccac agggatgtac ctggtgagct gctgcccaac tttcttgtac aaagtggttg
2761gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
2821accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)