Construct: ORF ccsbBroad304_07877

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016448.1_s304c1, BRDN0000400511
Derived from:
ccsbBroadEn_07877
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPWD1 (23398)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07877
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23398 PPWD1 peptidylprolyl isomerase do... NM_015342.4 99.9% 100% 1725A>G
2 human 23398 PPWD1 peptidylprolyl isomerase do... NM_001278926.1 91.6% 90.5% 0_1ins127;68_104del;1635A>G
3 human 23398 PPWD1 peptidylprolyl isomerase do... XM_006714583.4 84.7% 84.5% (many diffs)
4 human 23398 PPWD1 peptidylprolyl isomerase do... NM_001278927.2 78.2% 72.6% 0_1ins247;77_78ins173;1305A>G
5 human 23398 PPWD1 peptidylprolyl isomerase do... NM_001278929.1 75.7% 75.8% 0_1ins468;1257A>G
6 human 23398 PPWD1 peptidylprolyl isomerase do... XM_005248474.4 52% 49.3% (many diffs)
7 human 23398 PPWD1 peptidylprolyl isomerase do... XM_017009286.1 49.9% 50% 0_1ins969;756A>G
8 mouse 238831 Ppwd1 peptidylprolyl isomerase do... NM_172807.4 90.5% 97.2% (many diffs)
9 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XM_006517642.3 84.2% 88.1% (many diffs)
10 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XR_001780782.1 77.3% (many diffs)
11 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XM_011244658.2 71.6% 74.3% (many diffs)
12 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XM_017315513.1 69.3% 74.6% (many diffs)
13 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XR_873754.2 51.6% (many diffs)
14 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XM_017315514.1 45.7% 49.2% (many diffs)
15 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XM_017315515.1 45.7% 49.2% (many diffs)
16 mouse 238831 Ppwd1 peptidylprolyl isomerase do... XR_873753.1 44.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2004
ORF length:
1938
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggcggaaagt ggtagcgatt ttcagcagag acgtagaagg cgccgggacc
121cggaggaacc ggaaaaaaca gaactcagcg aaagagagct ggcagtagca gtggcggtgt
181cccaggagaa cgatgaggag aacgaagagc gctgggttgg acctttacct gtggaggcaa
241cactggccaa gaagaggaaa gtcttagagt ttgaaagagt ctatcttgat aatctcccca
301gtgcatccat gtatgagcgc agttacatgc atagagatgt tatcacccat gtggtatgca
361ccaaaacaga ttttattatt actgccagtc atgatggaca tgtcaagttc tggaaaaaaa
421tagaagaggg aattgaattt gttaaacatt ttcgtagtca cctgggagtt attgagagta
481ttgcagttag ctctgaggga gcattgttct gttctgtggg tgatgataaa gcaatgaagg
541tgtttgatgt agtgaacttt gacatgatca acatgctgaa acttggctat tttcctggac
601agtgtgagtg gatctattgc ccaggggatg caatttcttc agttgctgct tccgaaaaga
661gtacaggaaa aattttcatt tatgatggcc gaggagataa ccagccactt catatttttg
721acaaactcca tacatcacct cttactcaga tacggctaaa cccagtttac aaagcagtag
781tgtcttctga caaatctggg atgattgaat actggactgg gcctcctcat gaatataaat
841tccccaaaaa tgtgaactgg gaatataaaa ctgacactga tttatatgaa tttgccaagt
901gtaaggctta tccaaccagc gtatgttttt caccagatgg gaagaaaata gctactattg
961gttctgatag aaaagttaga attttcagat ttgtaactgg aaaactcatg agagtctttg
1021atgaatcact aagcatgttt actgaactgc aacagatgag gcaacagtta ccagacatgg
1081aatttggccg acgaatggct gtagaacgtg agttggagaa ggttgatgct gtaagattaa
1141ttaatatagt ttttgatgaa actggacact tcgtgctgta tggaacaatg ctgggcatta
1201aagttataaa tgtagagaca aaccggtgtg tgcggatttt aggcaaacaa gaaaatatta
1261gagtgatgca attggctttg ttccagggga tagccaaaaa gcatcgtgct gcaactacta
1321tagaaatgaa agcttctgaa aatcctgttc ttcagaatat tcaagctgac ccaacaatag
1381tctgtacatc attcaaaaag aatagatttt atatgtttac caaacgagaa ccagaagata
1441cgaaaagtgc agattctgat cgagatgttt ttaatgagaa accttctaaa gaagaagtca
1501tggcagctac tcaagctgaa ggacctaaac gagtttcgga cagtgccatt atccacacca
1561gcatgggaga cattcacacc aaactttttc ctgttgagtg ccctaagaca gtggaaaact
1621tctgtgttca cagcagaaat ggttattata atgggcatac atttcaccgt ataattaagg
1681gctttatgat tcagactgga gatccaacag gtactggtat gggaggagaa agcatatggg
1741gaggagaatt tgaagatgaa tttcattcaa cattacgaca tgacaggccg tacacactca
1801gcatggctaa cgcgggatca aatactaatg gatcccagtt tttcataacg gtagtaccaa
1861cgccttggct tgataataag catacagtat ttggacgagt gactaaagga atggaagttg
1921tacagaggat ctccaacgtc aaagtcaatc ccaaaacaga taagccctat gaggatgtca
1981gcatcataaa tattactgtc aagtacccaa ctttcttgta caaagtggtt ggtaagccta
2041tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2101gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)