Construct: ORF ccsbBroad304_08007
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013444.1_s304c1, BRDN0000402338
- Derived from:
- ccsbBroadEn_08007
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CABYR (26256)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08007
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26256 | CABYR | calcium binding tyrosine ph... | NM_138644.2 | 99.9% | 100% | 831T>C |
| 2 | human | 26256 | CABYR | calcium binding tyrosine ph... | NM_153769.3 | 99.9% | 100% | 831T>C |
| 3 | human | 26256 | CABYR | calcium binding tyrosine ph... | XM_005258247.2 | 95.1% | 95.2% | 143_144ins54;777T>C |
| 4 | human | 26256 | CABYR | calcium binding tyrosine ph... | NM_138643.3 | 74% | 74.1% | 0_1ins294;537T>C |
| 5 | human | 26256 | CABYR | calcium binding tyrosine ph... | NM_153770.3 | 58.3% | 58.3% | 538_539ins474 |
| 6 | mouse | 71132 | Cabyr | calcium-binding tyrosine-(Y... | NM_181731.3 | 82% | 74.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1203
- ORF length:
- 1137
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgat ttcttcaaag cccagacttg tcgtacccta tggcctcaag actctgctcg 121 agggaattag cagagctgtt ctcaaaacca acccatcaaa catcaaccag tttgcagcag 181 cttattttca agaacttact atgtatagag ggaatactac tatggatata aaagatctgg 241 ttaaacaatt tcatcagatt aaagtagaga aatggtcaga aggaacgaca ccacagaaga 301 aattagaatg tttaaaagaa ccaggaaaaa catctgtaga atctaaagta cctacccaga 361 tggaaaaatc tacagacaca gacgaggaca atgtaaccag aacagaatat agtgacaaaa 421 ccacccagtt tccatcagtt tatgctgtgc caggcactga gcaaacggaa gcagttggtg 481 gtctttcttc caaaccagcc acccctaaga ctactacccc accctcatca ccacctccaa 541 cagctgtctc accagagttt gcctacgtcc cagctgaccc agctcagctt gctgctcaga 601 tgttagcaat ggcaacaagt gaacgaggac aaccaccacc atgttctaac atgtggaccc 661 tttattgtct aactgataag aatcaacaag gtcacccatc accgccacct gcacctgggc 721 cttttcccca agcaaccctc tatttaccta atcctaagga tccacagttt cagcagcatc 781 caccaaaagt cacttttcca acttatgtga tgggcgacac caagaagacc agtgccccac 841 cttttatctt agtaggctca aatgttcagg aagcacaggg atggaaacct cttcccggac 901 atgctgtcgt ttcacagtca gatgtcttga gatatgttgc aatgcaagtg cccattgctg 961 ttcctgcaga tgagaaatac cagaaacata ccctaagtcc ccagaatgct aatcctccaa 1021 gtggacaaga tgtccccagg ccaaaaagcc ctgttttcct ttctgttgct ttcccagtag 1081 aagatgtagc taaaaaaagt tcaggatctg gtgacaaatg tgctcccttt ggaagttacg 1141 gtattgctgg ggaggtaacc gtgactactg ctcacaaacg tcgcaaagca gaaactgaaa 1201 actgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1261 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1321 tctggatta