Construct: ORF ccsbBroad304_08050

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001518.1_s304c1, BRDN0000408552
Derived from:
ccsbBroadEn_08050
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STAU2 (27067)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08050
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27067 STAU2 staufen double-stranded RNA... NM_001164384.1 99.9% 99.7% 496G>A
2 human 27067 STAU2 staufen double-stranded RNA... NM_014393.2 99.9% 99.7% 496G>A
3 human 27067 STAU2 staufen double-stranded RNA... NM_001164385.1 98.6% 98.5% 0_1insATGCTTCAAATAAATCAG;478G>A
4 human 27067 STAU2 staufen double-stranded RNA... NM_001164381.1 88.9% 88.6% 496G>A;1436C>T;1438_1614del
5 human 27067 STAU2 staufen double-stranded RNA... NM_001164380.2 83.1% 82.8% (many diffs)
6 human 27067 STAU2 staufen double-stranded RNA... NM_001164382.1 70.5% 70.4% 0_1ins216;280G>A;1221_1512delinsA
7 human 27067 STAU2 staufen double-stranded RNA... NM_001164383.1 62.8% 62.6% (many diffs)
8 mouse 29819 Stau2 staufen (RNA binding protei... NM_001347045.1 91.3% 96% (many diffs)
9 mouse 29819 Stau2 staufen (RNA binding protei... XM_017321109.1 89.2% 93.8% (many diffs)
10 mouse 29819 Stau2 staufen (RNA binding protei... NM_001347044.1 85.3% 89% (many diffs)
11 mouse 29819 Stau2 staufen (RNA binding protei... XM_011238390.2 83.6% 87.1% (many diffs)
12 mouse 29819 Stau2 staufen (RNA binding protei... NM_001111272.1 81.2% 85.3% (many diffs)
13 mouse 29819 Stau2 staufen (RNA binding protei... XM_006495532.3 81.2% 85.3% (many diffs)
14 mouse 29819 Stau2 staufen (RNA binding protei... XM_011238389.1 81.2% 85.3% (many diffs)
15 mouse 29819 Stau2 staufen (RNA binding protei... XM_011238388.2 79.7% 83.1% (many diffs)
16 mouse 29819 Stau2 staufen (RNA binding protei... NM_025303.3 76.4% 79.6% (many diffs)
17 mouse 29819 Stau2 staufen (RNA binding protei... XM_006495528.3 76.4% 79.6% (many diffs)
18 mouse 29819 Stau2 staufen (RNA binding protei... XM_011238387.1 76.4% 79.6% (many diffs)
19 mouse 29819 Stau2 staufen (RNA binding protei... XM_017321102.1 76.4% 79.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1506
ORF length:
1437
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcttcaaata aatcagatgt tctcagtgca gctgagtctt ggtgagcaga
121catgggaatc cgaaggcagc agtataaaga aggctcagca ggctgttgcc aataaagctt
181tgactgaatc tacgcttccc aaaccagttc agaagccacc caaaagtaat gttaacaata
241acccaggcag tataactcca actgtggaac tgaatgggct tgctatgaaa aggggagagc
301ctgccatcta caggccatta gatccaaagc cattcccaaa ttatagagct aattacaact
361ttcggggcat gtacaatcag aggtatcatt gcccagtgcc taagatcttt tatgttcagc
421tcactgtagg aaataatgaa ttttttgggg aaggaaagac tcgacaagct gctagacaca
481atgctgcaat gaaagccctc caagcactgc agaatgaacc tattccagaa agatctcctc
541agaatggtga atcaggaaag gatatggatg atgacaaaga tgcaaataag tctgagatca
601gcttagtgtt tgaaattgct ctgaagcgaa atatgcctgt cagttttgag gttattaaag
661aaagtggacc accacatatg aaaagctttg ttactcgagt gtcagtagga gagttctctg
721cagaaggaga aggaaatagc aaaaaactct ccaagaagcg cgctgcgacc accgtcttac
781aggagcttaa aaaacttcca cctcttcctg tggtggaaaa gccaaaacta ttttttaaaa
841aacgccctaa aacaatagta aaggccggac cagaatatgg ccaagggatg aaccctatta
901gccgcctggc gcaaattcaa caggccaaaa aggaaaagga gccggattat gttttgcttt
961cagaaagagg aatgcctcga cgtcgagaat ttgtgatgca ggtgaaggta ggcaatgaag
1021ttgctacagg aacaggacct aataaaaaga tagccaaaaa aaatgctgca gaagcaatgc
1081tgttacaact tggttataaa gcatccacta atcttcagga tcaacttgag aagacagggg
1141aaaacaaagg atggagtggt ccaaagcctg ggtttcctga accaacaaat aatactccaa
1201aaggaattct tcatttgtct cctgatgttt atcaagagat ggaagccagc cgccacaaag
1261taatctctgg cactactcta ggctatttgt cacccaaaga tatgaaccaa ccttcaagct
1321ctttcttcag tatatctccc acatcgaata gttcagctac aattgccagg gaactcctta
1381tgaatggaac atcttctaca gctgaagcca taggtttaaa aggaagttct cctactcccc
1441cttgttctcc agtacaacct tcaaaacaac tggaatattt agcaaggatt caaggctttc
1501aggtattgcc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1561gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1621acctctggat ta

Download FASTA (ORF) (Full)