Construct: ORF ccsbBroad304_08332

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006924.1_s304c1, BRDN0000398934
Derived from:
ccsbBroadEn_08332
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC25A39 (51629)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08332
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51629 SLC25A39 solute carrier family 25 me... NM_016016.3 99.7% 99.4% 9C>N;715T>C;1050C>G
2 human 51629 SLC25A39 solute carrier family 25 me... NM_001321241.1 98% 97.7% (many diffs)
3 human 51629 SLC25A39 solute carrier family 25 me... NM_001143780.3 97.4% 96.9% (many diffs)
4 human 51629 SLC25A39 solute carrier family 25 me... XM_011524880.3 95.8% 95.3% (many diffs)
5 human 51629 SLC25A39 solute carrier family 25 me... NM_001321240.1 95.4% 94.8% (many diffs)
6 human 51629 SLC25A39 solute carrier family 25 me... XM_011524882.3 93.8% 93.2% (many diffs)
7 human 51629 SLC25A39 solute carrier family 25 me... XM_024450797.1 78.8% 78.6% (many diffs)
8 human 51629 SLC25A39 solute carrier family 25 me... XM_024450796.1 77.7% 77.5% (many diffs)
9 human 51629 SLC25A39 solute carrier family 25 me... NM_001366726.1 73.3% 62.9% (many diffs)
10 human 51629 SLC25A39 solute carrier family 25 me... XM_011524883.3 72% 61.9% (many diffs)
11 human 51629 SLC25A39 solute carrier family 25 me... XM_011524884.1 72% 61.9% (many diffs)
12 human 51629 SLC25A39 solute carrier family 25 me... NR_159402.1 60.4% (many diffs)
13 human 51629 SLC25A39 solute carrier family 25 me... NR_159401.1 59.6% (many diffs)
14 human 51629 SLC25A39 solute carrier family 25 me... NR_159403.1 58.8% (many diffs)
15 human 51629 SLC25A39 solute carrier family 25 me... NR_159404.1 57.1% (many diffs)
16 human 51629 SLC25A39 solute carrier family 25 me... XR_002958020.1 56.4% (many diffs)
17 human 51629 SLC25A39 solute carrier family 25 me... NR_159405.1 53.4% (many diffs)
18 human 51629 SLC25A39 solute carrier family 25 me... XR_002958018.1 50.6% (many diffs)
19 human 51629 SLC25A39 solute carrier family 25 me... XR_002958019.1 34.4% (many diffs)
20 mouse 68066 Slc25a39 solute carrier family 25, m... NM_026542.3 84.3% 86.9% (many diffs)
21 mouse 68066 Slc25a39 solute carrier family 25, m... XM_006534034.1 84.3% 86.9% (many diffs)
22 mouse 68066 Slc25a39 solute carrier family 25, m... XM_006534035.1 84.3% 86.9% (many diffs)
23 mouse 68066 Slc25a39 solute carrier family 25, m... XM_006534036.3 78.2% 80.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1119
ORF length:
1053
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgancaggac cctgcgggca tcagccccct ccagcaaatg gtggcctcag
121gcaccggggc tgtggttacc tctctcttca tgacacccct ggacgtggtg aaggttcgcc
181tgcagtctca gcggccctcc atggccagcg agctgatgcc ttcctccaga ctgtggagcc
241tctcctatac caaatggaag tgcctcctgt attgcaatgg tgtcctggag cctctgtacc
301tgtgcccaaa tggtgcccgc tgtgccacct ggtttcaaga ccctacccgc ttcactggca
361ccatggatgc cttcgtgaag atcgtgaggc acgagggcac caggaccctc tggagcggcc
421tccccgccac cctggtgatg actgtgccag ctaccgccat ctacttcact gcctatgacc
481aactgaaggc cttcctgtgt ggtcgagccc tgacctctga cctctacgca cccatggtgg
541ctggcgcgct ggcccgcctg ggcaccgtga ctgtgatcag ccccctggag cttatgcgga
601caaagctgca ggctcagcat gtgtcgtacc gggagctggg tgcctgtgtt cgaactgcag
661tggctcaggg tggctggcgc tcactgtggc tgggctgggg ccccactgcc cttcgagatg
721tgcccttctc agccctgtac tggttcaact atgagctggt gaagagctgg ctcaatgggc
781tcaggccgaa ggaccagact tctgtgggca tgagctttgt ggctggtggc atctcaggga
841cggtggctgc agtgctgact ctaccctttg acgtggtaaa gacccaacgc caggtcgctc
901tgggagcgat ggaggctgtg agagtgaacc ccctgcatgt ggactccacc tggctgctgc
961tgcggaggat ccgggccgag tcgggcacca agggactctt tgcaggcttc cttcctcgga
1021tcatcaaggc tgccccctcc tgtgccatca tgatcagcac ctatgagttc ggcaaaagct
1081tcttccagag gctgaaccag gaccggcttc tggggggctg cccaactttc ttgtacaaag
1141tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1201gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)