Construct: ORF ccsbBroad304_08621

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002136.1_s304c1, BRDN0000462139
Derived from:
ccsbBroadEn_08621
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGA2 (56113)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08621
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56113 PCDHGA2 protocadherin gamma subfami... NM_032009.3 99.9% 100% 552G>A
2 human 56113 PCDHGA2 protocadherin gamma subfami... NM_018915.4 87.2% 86.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2538
ORF length:
2469
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggctctg caaaagttgc cacactgcag aaagctggtc ctgctgtgct
121tccttttggc gaccctgtgg gaggccaggg ccgggcagat tcgctattct gtgcgggaag
181agatcgacag aggctccttc gtaggcaaca tcgccaagga cttgggtttg gagcccctgg
241cactggcaga gcagggagtc cgcatcgtct ccagaggtag gtcccagctc tttgctctga
301acccgcgaag cggcagcttg gtcactgcga acaggataga ccgggaggag ctctgcgctc
361agagcgcacc ctgtctgttg aattttaaca ttctgctgga ggataaattg actatttatt
421cagtagaggt ggaaataaca gatattaacg ataatgcccc tcgctttgga gtagaggaac
481tggagctaaa aatcagtgaa accactacgc caggattccg gattcctctt aagaatgcgc
541atgatgcaga cgtaggtgag aacgcccttc agaagtacgc actcaaccca aatgaccact
601tctccctgga cgtgcgaaga ggagctgatg ggaacaagta cccagaactg gtgctggagc
661gctctctgga ccgcgaggaa gaggctgttc accacctcgt tctcgtggct tctgatgggg
721gtgacccagt gctatctggc acctcccgca tctgcgtgaa ggtcctggat gcgaacgaca
781atgcgcctgt ttttacacag cccgagtacc gcataagcat tccggagaat acgctcgtgg
841gcacccggat actcacggtg accgccactg acgcagatga gggctactac gctcaagtgg
901tatattttct agagaaaagc cctggagaaa cctcagaggt atttgagctt aagtcaacat
961ctggagaact gacaatcata aaagatctag attatgagga tgctacattc catgaaattg
1021atattgaagc tcaggatggt ccgggccttc taaccagagc gaaggttatc gtcacggttc
1081tggatgtgaa tgacaatgcc ccagaatttt acatgacatc tgctactagc tcagtttctg
1141aagactctct tccaggaacc ataattgggc tttttaatgt acatgataga gactctgggc
1201agaacgcatt caccacctgt tcactccccg aggatcttcc ttttaagtta gaaaagtcag
1261tagacaatta ctaccgactg gttacaacca gagcccttga cagggaacag ttttcctttt
1321acaacatcac tctaaccgct aaagatggag ggaacccctc cctgtccacg gatgctcaca
1381ttttgctcca ggtggcagac atcaacgaca acgcacccgc cttctcccgc acatcctact
1441ccacctacat tcccgaaaac aaccccagag gagcctctgt cttctcagtg acggcccatg
1501accccgacag caacgacaat gctcatgtaa cttactcttt cgcggaggac actgttcagg
1561gggcaccctt atcctcttac atctctatca actccgacac tggagtactc tatgcactgc
1621gctcctttga ttatgagcag ttgcgagact tgcaagtgtg ggtgatagcg cgggacagcg
1681ggaaccctcc actcagtagc aatgtatcat taagcctgtt cgtgctggac cagaacgaca
1741acgcgcccga gatcctgtac cctgccttcc ccacagacgg ttccactggc gtggagctgg
1801cgccccgctc cgcagagccc ggctacctgg tgaccaaggt ggtggcggtg gacagagact
1861cgggccagaa cgcctggctg tcttaccacc tgctcaaggc cagcgagccg ggactcttct
1921cggtgggtct gcacacgggc gaggtgcgca cggcgcgagc cctgctggac agagacgcgc
1981tcaagcagag cctcgtggtg gccatccagg accacggcca gccccctctc tccgccactg
2041tcacgctcac cgtggccgtg gccgacagga tccccgacat cctggccgac ctgggcagcc
2101tcgagccctc cgccataccc aacgattcgg acctcactct gtacctggtg gtggcggtgg
2161ccgcggtctc ctgcgtcttc ctggccttcg tcatcgtgtt gctggcgcac aggctgcggc
2221gctggcacaa gtcacgcctg ctgcaggctt caggaggcag cttgacaggc atgcagagct
2281cgcactttgt gggcgtggac ggggttcggg ctttcctgca gacctattcc cacgaggtct
2341ccctcactgc ggactcgcgg aagagccacc tgattttccc ccagcccaac tatgcggaca
2401cgctcatcag ccaggagagc tgtgagaaaa aggatttttt atcagcgcct caatctctac
2461tcgaagaaga aagagaagaa acgttttctc aggtaatcta tcttttcaca acatacgtac
2521tagctagttt gctgaagttg ccaactttct tgtacaaagt ggttggtaag cctatcccta
2581accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
2641agtcgacaat caacctctgg atta

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