Construct: ORF ccsbBroad304_08674

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005129.1_s304c1, BRDN0000460756
Derived from:
ccsbBroadEn_08674
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDR39U1 (56948)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08674
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56948 SDR39U1 short chain dehydrogenase/r... NM_020195.2 99.4% 98.6% (many diffs)
2 human 56948 SDR39U1 short chain dehydrogenase/r... XM_011536975.2 92.1% 91.4% (many diffs)
3 human 56948 SDR39U1 short chain dehydrogenase/r... NM_001290292.1 71.6% 62% (many diffs)
4 human 56948 SDR39U1 short chain dehydrogenase/r... NM_001308075.1 71.6% 62% (many diffs)
5 human 56948 SDR39U1 short chain dehydrogenase/r... NM_001290293.2 62.5% 61.7% (many diffs)
6 mouse 654795 Sdr39u1 short chain dehydrogenase/r... NM_001082975.1 85.4% 84.6% (many diffs)
7 mouse 654795 Sdr39u1 short chain dehydrogenase/r... XM_006519365.3 70.9% 69.3% (many diffs)
8 mouse 654795 Sdr39u1 short chain dehydrogenase/r... XM_006519366.2 55.5% 54.7% (many diffs)
9 mouse 654795 Sdr39u1 short chain dehydrogenase/r... XM_011245133.2 55.5% 54.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
945
ORF length:
879
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg tgtgcttgtg ggtggcggga caggcttcat tgggacagcc ctaacccagc
121tgctgaatgc cagaggccac gaagtgacgt tggtctcccg aaagcccggg cccggccgga
181tcacgtggga tgagctcgct gcatcggggc tgccgagctg cgatgccgcc gtcaacctgg
241ccggagagaa catcctcaac cctctccgaa gatggaatga aaccttccaa aaagaggttc
301tcggcagccg cctagagacc acccaattgc tggctaaagc catcaccaaa gccccacaac
361cccccaaggc ctgggtctta gtcacaggtg tagcttacta ccagcccagt ctgactgcgg
421agtatgatga agacagccca ggaggggact ttgacttttt ctccaacctc gtaaccaaat
481gggaagctgc agccaggctt cctggagatt ctacacgcca ggtggtggtg cgctcagggg
541ttgtgctggg ccgtgggggt ggtgccatgg gccacatgct gctgcccttt cgcctgggcc
601tggggggccc catcggctca ggccaccaat tcttcccctg gatacacatc ggggacctgg
661caggaatcct gacccatgcc cttgaagcaa accacgtgca cggggtcctg aatggagtgg
721ctccatcctc cgccactaat gctgagtttg cccagacctt cggtgctgcc ctgggccgcc
781gagccttcat ccctctcccc agcgctgtgg tgcaagctgt ctttgggcga cagcgtgcca
841tcatgctgct ggagggccag aaggtgatcc cacggcgaac actggccact ggctaccagt
901attccttccc agagctaggg gctgccttaa aggaacttgt agcctaccca actttcttgt
961acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1021gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)