Construct: ORF ccsbBroad304_08689
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011567.1_s304c1, BRDN0000400052
- Derived from:
- ccsbBroadEn_08689
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKMY2 (57037)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08689
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57037 | ANKMY2 | ankyrin repeat and MYND dom... | NM_020319.3 | 99.9% | 100% | 1221C>T |
| 2 | human | 57037 | ANKMY2 | ankyrin repeat and MYND dom... | XM_011515458.2 | 89.4% | 89.5% | 0_1ins138;1083C>T |
| 3 | mouse | 217473 | Ankmy2 | ankyrin repeat and MYND dom... | NM_146033.3 | 85.1% | 88.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1389
- ORF length:
- 1323
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggt tcacataaag aaaggcgagc tgacccagga ggagaaggag ctactggaag 121 tcatcgggaa aggtactgtc caagaagctg gaacattatt atccagcaag aatgttcgtg 181 tcaactgttt ggacgagaat ggaatgactc ctctaatgca tgcagcatat aaaggaaaac 241 tcgatatgtg caaattacta ctgcgacatg gagccgatgt aaattgtcat cagcatgaac 301 atggatacac agccctcatg tttgctgcac tttctggtaa taaagacatc acatgggtaa 361 tgttagaagc tggtgctgag acagatgttg tcaactctgt gggaagaaca gcagctcaga 421 tggcagcctt tgtgggtcaa catgattgtg tgaccataat caacaatttc tttcctcgag 481 agagactgga ttattacact aagccccagg gactggataa agagccaaaa ctgcccccaa 541 agttggcagg cccgctgcac aaaattatca ccacaacgaa tcttcatcct gtcaagatcg 601 tgatgcttgt aaatgagaat cctctgctga cagaagaagc agccctgaat aaatgctaca 661 gagtgatgga tttgatttgt gagaaatgta tgaagcaaag agacatgaat gaagtattgg 721 ctatgaagat gcattacata agctgtatct ttcagaaatg cattaacttc ttaaaagatg 781 gagagaataa actggacacc ttgatcaaaa gcttgttaaa aggccgagct tctgatggct 841 ttccagtgta tcaagaaaag atcattagag aaagtatcag aaaatttcct tactgtgaag 901 ctacactcct ccagcagctg gttcgaagca ttgctcctgt tgaaattggt tctgatccca 961 ctgcattctc cgtccttacc caagccatca ctggccaggt gggttttgtg gatgtggaat 1021 tttgcactac ctgtggagaa aagggagcaa gtaaaagatg ttcagtttgc aaaatggtaa 1081 tatattgtga tcaaacctgc cagaaaacac actggtttac tcataagaaa atctgtaaga 1141 atctgaagga catttacgaa aagcaacagt tggaggctgc caaagaaaag agacaagagg 1201 aaaaccacgg caaacttgat gtcaattcta actgtgttaa tgaagagcaa ccagaggctg 1261 aagtaggtat ctctcaaaag gattctaatc ctgaagattc cggggaagga aagaaagaat 1321 ctcttgaaag cgaagctgag ttggaaggct tacaggatgc tcctgcaggg ccacaggtgt 1381 ctgaggagta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 1441 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 1501 tcaacctctg gatta