Transcript: Human XM_011515458.2

PREDICTED: Homo sapiens ankyrin repeat and MYND domain containing 2 (ANKMY2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANKMY2 (57037)
Length:
2675
CDS:
510..1697

Additional Resources:

NCBI RefSeq record:
XM_011515458.2
NBCI Gene record:
ANKMY2 (57037)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011515458.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000149923 GCAAGAATGTTCGTGTCAACT pLKO.1 472 5UTR 100% 4.950 6.930 N ANKMY2 n/a
2 TRCN0000149718 GCTGAAGTAGGTATCTCTCAA pLKO.1 1563 CDS 100% 4.950 6.930 N ANKMY2 n/a
3 TRCN0000147211 CCAAGAAGCTGGAACATTATT pLKO.1 446 5UTR 100% 15.000 10.500 N ANKMY2 n/a
4 TRCN0000423442 CATGATTGTGTGACCATAATC pLKO_005 747 CDS 100% 13.200 9.240 N ANKMY2 n/a
5 TRCN0000428891 GTAAGAATCTGAAGGACATTT pLKO_005 1441 CDS 100% 13.200 9.240 N ANKMY2 n/a
6 TRCN0000435960 TGGATTTGATTTGTGAGAAAT pLKO_005 973 CDS 100% 13.200 9.240 N ANKMY2 n/a
7 TRCN0000425295 TGTTGACCATGCCCTAATTTC pLKO_005 1846 3UTR 100% 13.200 9.240 N ANKMY2 n/a
8 TRCN0000419291 ACACACTGGTTTACTCATAAG pLKO_005 1413 CDS 100% 10.800 7.560 N ANKMY2 n/a
9 TRCN0000148429 CCTCTAATGCATGCAGCATAT pLKO.1 516 CDS 100% 10.800 7.560 N ANKMY2 n/a
10 TRCN0000426481 GGTAATATATTGTGATCAAAC pLKO_005 1382 CDS 100% 10.800 7.560 N ANKMY2 n/a
11 TRCN0000147288 GCTTTCCAGTGTATCAAGAAA pLKO.1 1144 CDS 100% 5.625 3.938 N ANKMY2 n/a
12 TRCN0000148748 CCTTTGCCATAGTTCAGCTAA pLKO.1 2212 3UTR 100% 4.950 3.465 N ANKMY2 n/a
13 TRCN0000216612 GACTGGATTATTACACTAAAC pLKO.1 790 CDS 100% 10.800 7.560 N Ankmy2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011515458.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08689 pDONR223 100% 89.4% 89.5% None 0_1ins138;1083C>T n/a
2 ccsbBroad304_08689 pLX_304 0% 89.4% 89.5% V5 0_1ins138;1083C>T n/a
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