Transcript: Mouse NM_146033.3

Mus musculus ankyrin repeat and MYND domain containing 2 (Ankmy2), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Ankmy2 (217473)
Length:
2458
CDS:
234..1556

Additional Resources:

NCBI RefSeq record:
NM_146033.3
NBCI Gene record:
Ankmy2 (217473)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146033.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216612 GACTGGATTATTACACTAAAC pLKO.1 652 CDS 100% 10.800 15.120 N Ankmy2 n/a
2 TRCN0000176639 CCTATCCAGAAACTGTGATTT pLKO.1 2284 3UTR 100% 13.200 10.560 N Ankmy2 n/a
3 TRCN0000278647 CCTATCCAGAAACTGTGATTT pLKO_005 2284 3UTR 100% 13.200 10.560 N Ankmy2 n/a
4 TRCN0000198068 CGGAAGTTTCCATACTGTGAA pLKO.1 1047 CDS 100% 4.950 3.960 N Ankmy2 n/a
5 TRCN0000176904 GTCAATGAAGATCAACCAGAA pLKO.1 1404 CDS 100% 4.050 3.240 N Ankmy2 n/a
6 TRCN0000278645 GTCAATGAAGATCAACCAGAA pLKO_005 1404 CDS 100% 4.050 3.240 N Ankmy2 n/a
7 TRCN0000178591 CGGAAGACTGTTGTCTAGTAA pLKO.1 317 CDS 100% 5.625 3.938 N Ankmy2 n/a
8 TRCN0000278646 CGGAAGACTGTTGTCTAGTAA pLKO_005 317 CDS 100% 5.625 3.938 N Ankmy2 n/a
9 TRCN0000177902 CCGTCTTGATTTCCTGTTGAT pLKO.1 1710 3UTR 100% 4.950 3.465 N Ankmy2 n/a
10 TRCN0000278648 CCGTCTTGATTTCCTGTTGAT pLKO_005 1710 3UTR 100% 4.950 3.465 N Ankmy2 n/a
11 TRCN0000177903 CATGCAGCCTATAAAGGGAAA pLKO.1 387 CDS 100% 4.050 2.835 N Ankmy2 n/a
12 TRCN0000176946 GAAATGCATTACCTTCCTCAA pLKO.1 923 CDS 100% 4.050 2.835 N Ankmy2 n/a
13 TRCN0000297532 GAAATGCATTACCTTCCTCAA pLKO_005 923 CDS 100% 4.050 2.835 N Ankmy2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146033.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08689 pDONR223 100% 85.1% 88.8% None (many diffs) n/a
2 ccsbBroad304_08689 pLX_304 0% 85.1% 88.8% V5 (many diffs) n/a
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