Construct: ORF ccsbBroad304_08701

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015260.1_s304c1, BRDN0000401942
Derived from:
ccsbBroadEn_08701
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRPC7 (57113)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08701
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57113 TRPC7 transient receptor potentia... NM_020389.2 99.9% 100% 501C>T
2 human 57113 TRPC7 transient receptor potentia... NM_001167577.1 92.8% 92.9% 501C>T;777_778ins183
3 human 57113 TRPC7 transient receptor potentia... NM_001167576.1 86.5% 86.5% 501C>T;777_778ins348
4 mouse 26946 Trpc7 transient receptor potentia... NM_012035.3 90.4% 98.1% (many diffs)
5 mouse 26946 Trpc7 transient receptor potentia... NM_001302372.1 90.3% 98% (many diffs)
6 mouse 26946 Trpc7 transient receptor potentia... XM_006517262.3 75.5% 82.3% (many diffs)
7 mouse 26946 Trpc7 transient receptor potentia... XM_006517263.3 75% 81.7% (many diffs)
8 mouse 26946 Trpc7 transient receptor potentia... XM_006517264.3 69.4% 76% (many diffs)
9 mouse 26946 Trpc7 transient receptor potentia... XR_001780787.1 60.5% (many diffs)
10 mouse 26946 Trpc7 transient receptor potentia... NM_001302373.1 48.8% 54.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2655
ORF length:
2586
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttgaggaac agcaccttca aaaacatgca gcgccggcac acaacgctga
121gggagaaggg ccgtcgccag gccatccggg gtcccgccta catgttcaac gagaagggca
181ccagtctgac gcccgaggag gagcgcttcc tggactcggc tgagtatggc aacatcccgg
241tggtccggaa aatgctggag gagtccaaga cccttaactt caactgtgtg gactacatgg
301ggcagaacgc tctgcagctg gccgtgggca acgagcacct agaggtcacg gagctgctgc
361tgaagaagga gaacctggca cgggtggggg acgcgctgct gctggccatc agcaagggct
421atgtgcgcat cgtggaggcc atcctcaacc acccggcctt cgcgcagggc cagcgcctga
481cgctcagccc gctggaacag gagctgcgcg acgacgactt ctatgcctac gacgaggacg
541gcacgcgctt ctcccacgac atcacgccta tcatcctggc ggcgcactgc caggagtatg
601agatcgtgca catcctgctg ctcaagggcg cccgcatcga gcggccccac gactacttct
661gcaagtgcaa tgagtgcacc gagaaacagc ggaaagactc cttcagccac tcgcgctcgc
721gcatgaacgc ctacaaagga ctggcgagtg ctgcctactt gtccctgtcc agcgaagacc
781ctgtcctcac cgccctggag ctcagcaacg agttagccag actagccaac attgagactg
841aatttaagaa cgattacagg aagttatcta tgcaatgcaa ggattttgta gtgggcgtgc
901tggacctgtg ccgagacaca gaagaggtgg aagcaatttt aaacggtgat gtgaacttcc
961aagtctggtc cgaccaccac cgtccaagtc tgagccggat caaactcgcc attaaatatg
1021aagtcaagaa gttcgttgct catcctaact gtcagcagca attgcttacc atgtggtatg
1081aaaatctctc aggcttacgt caacagtcta tcgctgtgaa attcctggct gtctttggag
1141tctccatagg cctccctttt ctcgccatag cctattggat tgctccgtgc agcaagctag
1201gacgaaccct gaggagccct ttcatgaagt ttgtagctca tgcagtttct tttacaatct
1261tcttgggatt attagttgtg aatgcatctg accgatttga aggtgttaaa accctgccaa
1321acgaaacctt cacagactac ccaaaacaaa tcttcagagt gaaaaccaca cagttctcct
1381ggacagaaat gctcattatg aagtgggtct taggaatgat ttggtccgaa tgcaaggaaa
1441tctgggagga ggggccacgg gagtacgtgc tgcacttgtg gaacctgcta gatttcggga
1501tgctgtccat cttcgtggcc tccttcacag cacgcttcat ggccttcctg aaggccacgg
1561aggcacagct gtacgtggac cagcacgtgc aggacgacac gctgcacaat gtctcgcttc
1621cgccggaagt ggcatacttc acctacgcca gggacaagtg gtggccttca gaccctcaga
1681tcatatcgga agggctctac gcgatagccg tcgtgctgag cttctctcgc attgcataca
1741ttctgccagc caacgagagt tttgggcccc tgcagatctc gctagggaga actgtgaaag
1801atatcttcaa gttcatggtc attttcatca tggtatttgt ggccttcatg attgggatgt
1861tcaacctgta ctcttactac cgaggtgcca aatacaaccc agcgtttaca acggttgaag
1921aaagttttaa aactttgttt tggtccatat tcggcttatc tgaagtaatc tcagtggtgc
1981tgaaatacga ccacaaattc atcgagaaca ttggctacgt tctctacggc gtttataacg
2041tcaccatggt ggtagtgttg ctcaacatgc taatagccat gataaacaac tcctatcagg
2101aaattgagga ggatgcagat gtggaatgga agttcgcccg agcaaaactc tggctgtctt
2161actttgatga aggaagaact ctacctgctc cttttaatct agtgccaagt cctaaatcat
2221tttattatct cataatgaga atcaagatgt gcctcataaa actctgcaaa tctaaggcca
2281aaagctgtga aaatgacctt gaaatgggca tgctgaattc caaattcaag aagactcgct
2341accaggctgg catgaggaat tctgaaaatc tgacagcaaa taacactttg agcaagccca
2401ccagatacca gaaaatcatg aaacggctca taaaaagata cgtcctgaaa gcccaggtgg
2461acagagaaaa tgacgaagtc aatgaaggcg agctgaagga aatcaagcaa gatatctcca
2521gcctgcgcta tgagcttctt gaggaaaaat ctcaagctac tggtgagctg gcagacctga
2581ttcaacaact cagcgagaag tttggaaaga acttaaacaa agaccacctg agggtgaaca
2641agggcaaaga cattttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
2701ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
2761cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)