Construct: ORF ccsbBroad304_08951

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007033.1_s304c1, BRDN0000411885
Derived from:
ccsbBroadEn_08951
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBL1XR1 (79718)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08951
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001321193.3 99.8% 99.8% 1311C>T;1535T>C
2 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001321194.3 99.8% 99.8% 1311C>T;1535T>C
3 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001374327.1 99.8% 99.8% 1311C>T;1535T>C
4 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001374328.1 99.8% 99.8% 1311C>T;1535T>C
5 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001374329.1 99.8% 99.8% 1311C>T;1535T>C
6 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_024665.7 99.8% 99.8% 1311C>T;1535T>C
7 human 79718 TBL1XR1 transducin beta like 1 X-li... XM_006713746.1 99.8% 99.8% 1311C>T;1535T>C
8 human 79718 TBL1XR1 transducin beta like 1 X-li... XM_011513141.1 99.8% 99.8% 1311C>T;1535T>C
9 human 79718 TBL1XR1 transducin beta like 1 X-li... XM_011513142.2 99.8% 99.8% 1311C>T;1535T>C
10 human 79718 TBL1XR1 transducin beta like 1 X-li... XM_011513143.2 99.8% 99.8% 1311C>T;1535T>C
11 human 79718 TBL1XR1 transducin beta like 1 X-li... XM_024453751.1 99.8% 99.8% 1311C>T;1535T>C
12 human 79718 TBL1XR1 transducin beta like 1 X-li... XM_024453752.1 99.8% 99.8% 1311C>T;1535T>C
13 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001321195.3 82.9% 82.8% 0_1ins261;1050C>T;1274T>C
14 human 79718 TBL1XR1 transducin beta like 1 X-li... NM_001374330.1 82.9% 82.8% 0_1ins261;1050C>T;1274T>C
15 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... NM_030732.3 91.2% 98.8% (many diffs)
16 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_006535579.3 91.2% 98.8% (many diffs)
17 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_006535580.3 91.2% 98.8% (many diffs)
18 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_011249718.2 91.2% 98.8% (many diffs)
19 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_011249719.2 91.2% 98.8% (many diffs)
20 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_011249721.2 91.2% 98.8% (many diffs)
21 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_017319817.1 91.2% 98.8% (many diffs)
22 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_006535581.3 85.1% 91.2% (many diffs)
23 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_011249723.2 75.8% 81.9% (many diffs)
24 mouse 81004 Tbl1xr1 transducin (beta)-like 1X-l... XM_011249724.2 75.8% 81.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1611
ORF length:
1542
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gagtataagc agtgatgagg tcaacttctt ggtatataga tacttgcaag
121agtcaggatt ttctcattca gcatttacct ttggtataga aagccatatc agtcagtcca
181atataaatgg tgccctcgtc ccacccgctg cattgatttc tatcatccag aaaggtctac
241agtatgtaga agcagaagtt agtattaatg aggatggtac cttgtttgat ggtcgaccaa
301tagagtctct gtccctgata gatgccgtaa tgcctgatgt agtacaaaca agacaacaag
361cttatagaga taagcttgca cagcaacagg cagcagctgc tgcagctgcc gcagctgcag
421ccagccaaca aggatctgca aaaaatggag aaaacacagc aaatggggag gagaatggag
481cacatactat agcaaataat catactgata tgatggaagt ggatggggat gttgaaatcc
541ctcctaataa agctgttgtg ttgcggggcc atgaatctga agtttttatc tgtgcctgga
601accctgttag tgatctccta gcatcagggt ctggagactc aacagcaaga atatggaatc
661ttagtgagaa cagcaccagt ggctctacac agttagtact tagacattgt atacgagaag
721gagggcaaga tgttccaagc aacaaggatg tcacatctct agattggaat agtgaaggta
781cacttctagc aactggttcc tatgatgggt ttgccagaat atggactaaa gatggtaacc
841ttgctagcac cttagggcag cataaaggcc ctatatttgc attaaaatgg aataagaaag
901gaaatttcat cctaagtgct ggagtagaca agactacaat tatttGGGAC GCACATACTG
961GTGAAGCCAA GCAACAGTTT CCTTTTCATT CAGCACCAGC ATTGGATGTT GATTGGCAGA
1021GCAACAACAC CTTTGCTTCT TGTAGTACAG ATATGTGCAT TCATGTCTGT AAATTAGGAC
1081AAGACAGACC TATTAAAACA TTCCAAGGAC ATACGAATGA AGTAAATGCT ATCAAATGGG
1141ACCCAACTGG CAATCTCTTG GCCTCCTGTT CTGACGACAT GACTTTAAAG ATATGGAGTA
1201TGAAACAAGA CAATTGTGTC CATGATTTGC AAGCACATAA TAAAGAAATT TATACTATCA
1261AATGGAGTCC AACAGGACCA GGGACTAATA ATCCAAATGC CAACCTTATG TTAGCAAGTG
1321CATCCTTTGA TTCTACTGTT AGGTTATGGG ATGTAGACCG AGGGATATGC ATCCATACTT
1381TGACAAAACA CCAAGAGCCT GTGTACAGTG TAGCTTTCAG TCCTGATGGC AGGTATCTGG
1441CAAGTGGTTC TTTTGACAAA TGTGTACACA TCTGGAACAC GCAGACAGGT GCTCTAGTTC
1501ACAGCTATAG GGGAACAGGT GGAATATTTG AAGTTTGCTG GAATGCAGCA GGAGACAAAG
1561TTGGAGCCAG TGCATCAGAT GGTTCAGTTT GTGTATTAGA CCCTCGGAAA TTGCCAACTT
1621TCTTGTACaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1681agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)