Construct: ORF ccsbBroad304_09198

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000803.1_s304c1, BRDN0000403308
Derived from:
ccsbBroadEn_09198
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOPX (84525)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09198
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84525 HOPX HOP homeobox NM_001145459.1 99.5% 98.6% 215C>T
2 human 84525 HOPX HOP homeobox NM_139211.4 99.5% 98.6% 215C>T
3 human 84525 HOPX HOP homeobox NM_139212.3 99.5% 98.6% 215C>T
4 human 84525 HOPX HOP homeobox XM_017008730.2 99.5% 98.6% 215C>T
5 human 84525 HOPX HOP homeobox XM_017008731.2 99.5% 98.6% 215C>T
6 human 84525 HOPX HOP homeobox XM_017008732.1 99.5% 98.6% 215C>T
7 human 84525 HOPX HOP homeobox XM_017008733.1 99.5% 98.6% 215C>T
8 human 84525 HOPX HOP homeobox XM_017008734.1 99.5% 98.6% 215C>T
9 human 84525 HOPX HOP homeobox XM_017008728.1 82.5% 81.8% 1_45del;260C>T
10 human 84525 HOPX HOP homeobox NM_032495.6 79.8% 79.1% 1_54del;269C>T
11 human 84525 HOPX HOP homeobox XM_017008729.2 65.4% 64.8% 1_114del;329C>T
12 human 84525 HOPX HOP homeobox XM_006714052.2 56.3% 48.6% (many diffs)
13 human 84525 HOPX HOP homeobox NM_001145460.1 55.8% 48.6% (many diffs)
14 mouse 74318 Hopx HOP homeobox NM_001159900.1 89% 90.4% (many diffs)
15 mouse 74318 Hopx HOP homeobox NM_001159901.1 89% 90.4% (many diffs)
16 mouse 74318 Hopx HOP homeobox NM_175606.3 89% 90.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
285
ORF length:
219
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc ggcggagacc gcgagcggcc ccacagagga ccaggtggaa atcctggagt
121acaacttcaa caaggtcgac aagcacccgg attccaccac gctgtgcctc atcgcggccg
181aggcaggcct ttccgaggag gagacccaga aatggtttaa gcagcgcctg gcaaagtggc
241ggcgctcaga aggcctgccc tcagagtgca gatccgtcat agacaaccca actttcttgt
301acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
361gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)