Construct: ORF ccsbBroad304_09337

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008789.1_s304c1, BRDN0000408125
Derived from:
ccsbBroadEn_09337
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAF1 (92345)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09337
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92345 NAF1 nuclear assembly factor 1 r... NM_138386.3 99.8% 99.5% 484A>G;1463C>G
2 human 92345 NAF1 nuclear assembly factor 1 r... XM_011532410.3 99.8% 99.5% 484A>G;1463C>G
3 human 92345 NAF1 nuclear assembly factor 1 r... NM_001128931.2 75.6% 70.4% (many diffs)
4 human 92345 NAF1 nuclear assembly factor 1 r... XR_938798.3 72.4% (many diffs)
5 human 92345 NAF1 nuclear assembly factor 1 r... XR_938797.3 67.7% (many diffs)
6 human 92345 NAF1 nuclear assembly factor 1 r... XM_011532411.3 59% 58.9% 0_1ins606;857C>G
7 human 92345 NAF1 nuclear assembly factor 1 r... XR_938799.3 50.5% (many diffs)
8 human 92345 NAF1 nuclear assembly factor 1 r... XR_938796.3 48.2% (many diffs)
9 human 92345 NAF1 nuclear assembly factor 1 r... XR_001741350.2 44.6% (many diffs)
10 human 92345 NAF1 nuclear assembly factor 1 r... XR_001741349.2 42.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1548
ORF length:
1482
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggtagtggag gccgccgccg ctcagctgga aactctgaaa ttcaatggca
121ccgactttgg agttggggaa ggtccggcgg ctccgtctcc gggctctgcc cctgtgccag
181ggacacagcc gccgctacag tcgtttgagg ggtccccgga cgctgggcag accgtggagg
241ttaagcctgc cggggagcag cctctgcagc ccgttctgaa cgccgtcgcg gccgggaccc
301cggcgccgca gccacagcca ccggctgaat cgccggcctg cggagactgc gtcacctccc
361caggagccgc agagcctgcg cgggcgccgg actccttgga gacctcggac tcggattcgg
421actcggacag tgaaacagat tcagatagtt caagttcatc gtcttcctct tcatcttcct
481catcgtcgtc ttcttcctct tgtatatcac ttcctccagt gctgtcagat ggagatgatg
541atttacaagt tgagaaggaa aataagaatt ttcctcttaa aacaaaagat gaattacttc
601ttaatgaact gccttctgtt gaagaactca ctattattct gcctgaagat attgagttaa
661agcctcttgg gatggtttca agtattattg aacaactagt aataattgaa tctatgacta
721acctacctcc agttaatgag gagactgtaa tttttaaaag tgatcgacaa gcagcaggaa
781agatattcga gatatttgga cctgttgcac atccatttta tgtgttacgg tttaattctt
841cagatcacat tgagagtaaa ggtattaaaa taaaggagac tatgtatttt gctccatcaa
901tgaaagattt cactcaatat atattcacag aaaaactaaa acaggataag ggatcagatg
961catcatggaa gaatgatcag gaaccaccac cagaggcctt agattttagt gatgatgaaa
1021aagagaagga agccaaacag aggaaaaaat ctcagattca aggccggaaa aaactcaaat
1081ctgaatttaa tgagcctggt gaagatttta ctgaagtaca tcagaattgg aatgctcata
1141gctctgcttc agagcatgca aaaggatatc gtaacagaga attcacacga ggattttcca
1201gggccagata ccctcgatct tgccatggca ggcctccacc tcagcatttc tataactcag
1261aacatatggt atctcaggag acttcaggat ttccttctca gagacaaaat aatcccatta
1321tgccacaata cccctttcct cttccagtgt ttgacatgca taattttccc ctccgccctc
1381cacccccacc accaccccca cctgtaaaca tgggttgggc tacaccaaac atggctgctc
1441atccattact taacttacca tactccctac ccccaccccc tccccctcca ccactgcctc
1501ctccaccctc ttctggagat agtaattgtc attttggacc ttactattac ccaactttct
1561tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1621aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

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