Construct: ORF ccsbBroad304_09380

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014111.1_s304c1, BRDN0000400625
Derived from:
ccsbBroadEn_09380
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOGA1 (112817)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09380
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 112817 HOGA1 4-hydroxy-2-oxoglutarate al... NM_138413.4 99.8% 100% 912C>A
2 human 112817 HOGA1 4-hydroxy-2-oxoglutarate al... NM_001134670.1 50% 50.1% 210_211ins489;423C>A
3 mouse 67432 Hoga1 4-hydroxy-2-oxoglutarate al... NM_026152.1 85.4% 87.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1047
ORF length:
981
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gggtccccaa gtctggtctt ctgtgaggca ggggctaagc aggagcttgt
121ccaggaatgt gggggtctgg gcctcagggg aggggaagaa ggtggacatt gcgggtatct
181acccccctgt gaccaccccc ttcactgcca ctgcagaggt ggactatggg aaactggagg
241agaatctgca caaactgggc accttcccct tccgaggctt cgtggtccag ggctccaatg
301gcgagtttcc tttcctgacc agcagtgagc gcctcgaggt ggtgagccgt gtgcgccagg
361ccatgcccaa gaacaggctc ctgctagctg gctccggatg cgagtccact caagccacag
421tggagatgac cgtcagcatg gcccaggtcg gggctgacgc ggccatggtg gtgacccctt
481gctactatcg tggccgcatg agcagtgcgg ccctcattca ccactacacc aaggttgctg
541atctctctcc aatccctgtg gtgctgtaca gtgtcccagc caacacaggg ctggacctgc
601ctgtggatgc agtggtcacg ctttcccagc acccgaatat tgtgggcatg aaggacagcg
661gtggtgatgt gaccaggatt gggctgattg ttcacaagac caggaagcag gattttcagg
721tgttggctgg atcggctggc tttctgatgg ccagctatgc cttgggagct gtggggggcg
781tctgcgccct ggccaatgtc ctgggggctc aggtgtgcca gctggagcga ctgtgctgca
841cggggcaatg ggaagatgcc cagaaactgc agcaccgcct cattgagcca aacgctgcgg
901tgacccggcg ctttgggatc ccagggctga agaaaatcat ggactggttt ggctactatg
961gaggcccctg ccgcgcaccc ttgcaggagc tgagccccgc tgaggaggag gcactgcgca
1021tggatttcac cagcaacggc tggctctgcc caactttctt gtacaaagtg gttggtaagc
1081ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1141ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)