Construct: ORF ccsbBroad304_09398

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004831.1_s304c1, BRDN0000404470
Derived from:
ccsbBroadEn_09398
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PGLYRP3 (114771)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09398
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114771 PGLYRP3 peptidoglycan recognition p... NM_052891.2 99.9% 100% 1002C>T
2 human 114771 PGLYRP3 peptidoglycan recognition p... XM_011509119.1 99.9% 100% 1002C>T
3 human 114771 PGLYRP3 peptidoglycan recognition p... XM_011509120.2 95.7% 95.6% (many diffs)
4 human 114771 PGLYRP3 peptidoglycan recognition p... XM_011509118.1 90.3% 90.4% 55_162del;1110C>T
5 human 114771 PGLYRP3 peptidoglycan recognition p... XR_921736.1 50.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gacgctgcca tggcttcttg ccttcttcat tctgggtctc caggcttggg
121atactcccac catcgtctcc cgcaaggagt ggggggcaag accgctcgcc tgcagggccc
181tgctgaccct gcctgtggcc tacatcatca cagaccagct cccagggatg cagtgccagc
241agcagagcgt ttgcagccag atgctgcggg ggttgcagtc ccattccgtc tacaccatag
301gctggtgcga cgtggcgtac aacttcctgg ttggggatga tggcagggtg tatgaaggtg
361ttggctggaa catccaaggc ttgcacaccc agggctacaa caacatttcc ctgggcatcg
421ccttctttgg caataagata ggcagcagtc ccagccctgc tgccttatca gctgcagagg
481gtctgatctc ctatgccatc cagaagggtc acctgtcgcc caggtatatt cagccacttc
541ttctgaaaga agagacctgc ctggaccctc aacatccagt gatgcccagg aaggtttgcc
601ccaacatcat caaacgatct gcttgggaag ccagagagac acactgccct aaaatgaacc
661tcccagccaa atatgtcatc atcatccaca ccgctggcac aagctgcact gtatccacag
721actgccagac tgtcgtccga aacatacagt cctttcacat ggacacacgg aacttttgtg
781acattggata tcacttcctg gtgggccagg atggtggcgt gtatgaaggg gttggatggc
841acatccaagg ctctcacact tatggattca acgatattgc cctaggaatt gccttcatcg
901gctactttgt agaaaagcct ccaaatgctg cagcgctgga ggcggcccag gacctgatcc
961agtgtgccgt ggttgagggg tacctgactc caaactacct gctgatgggc cacagtgacg
1021tggtcaacat cctgtcccct gggcaggctt tgtataacat catcagtacc tggcctcatt
1081tcaagcactg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
1141tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
1201tcaacctctg gatta

Download FASTA (ORF) (Full)