Construct: ORF ccsbBroad304_09624

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002124.1_s304c1, BRDN0000461766
Derived from:
ccsbBroadEn_09624
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDAN1 (146059)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09624
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 146059 CDAN1 codanin 1 NM_138477.4 99.9% 99.8% 1262C>T;2317T>N
2 human 146059 CDAN1 codanin 1 XM_005254176.5 99.8% 99.7% 569_571delGCA;1265C>T;2320T>N
3 human 146059 CDAN1 codanin 1 XM_011521271.2 99.2% 99.1% 89_112del;1286C>T;2341T>N
4 human 146059 CDAN1 codanin 1 XM_011521270.2 99.2% 99.1% (many diffs)
5 human 146059 CDAN1 codanin 1 XR_001751105.1 77.6% (many diffs)
6 human 146059 CDAN1 codanin 1 XR_001751104.1 77.3% (many diffs)
7 human 146059 CDAN1 codanin 1 XM_011521274.2 72.5% 72.4% 0_1ins1008;254C>T;1309T>N
8 human 146059 CDAN1 codanin 1 XR_931757.2 59.4% (many diffs)
9 mouse 68968 Cdan1 congenital dyserythropoieti... NM_026891.2 85.6% 87.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3747
ORF length:
3681
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggccgttttg gagtcgctgc tgcgagaaga ggtgtcggtc gcagccgtcg
121tgcggtggat cgcgcgcagc acccagggtt cggaggataa cgctggggag gcggccgcgc
181tgagctcact ccgggccctg cggaaagaat tcgtaccgtt cctgttgaac ttcctgaggg
241agcagagcag ccgcgtcctc ccgcaggggc ccccgacccc cgccaagacc ccgggcgcct
301cggcagcctt gccagggagg ccgggaggcc cgccgcgggg tagccgcggg gcgcgcagcc
361agcttttccc tccgaccgag gcccagagca ccgctgccga ggcccctctg gcccgccgcg
421ggggcaggag gcggggcccg gggccggccc gcgagcgtgg aggccgcggc ctggaggagg
481gggtcagcgg ggagagcctg cccggagccg ggggccggag gcttaggggc tctggcagcc
541ccagccgccc cagcctcacg ctgtctgatc cgccaaacct cagcaacctg gaggagttcc
601ctcccgtagg ctcggttccc cccggcccta cagggacgaa gccttctcgc aggatcaacc
661caactccggt gagcgaagag cggtcactct ccaagcccaa gacctgcttc acctcacccc
721caatcagctg tgtccccagt tcccaaccct cagccctgga cactagccct tggggccttg
781gccttccccc agggtgcaga agtctgcaag aggagcgaga gatgctcagg aaggagcgct
841ctaagcagct gcagcagtca cctaccccca cctgtcccac cccagaattg gggtcgcccc
901tccccagccg gacaggaagc ctcacagatg aacctgcaga ccctgccaga gtgtcttccc
961gccagcgcct ggagcttgta gcccttgttt actcctcgtg cattgctgag aacctggtac
1021caaacctctt cttggagctt ttcttcgtct ttcagctcct cactgcccgg aggatggtga
1081ctgccaagga cagcgaccct gaactaagtc cagctgtcct agattccctg gaaagtccac
1141tgttccaaag catccacgat tgtgtcttct ttgcagtgca ggttttggag tgtcactttc
1201aggttctttc caacctggac aaagggacct tgaagctgct ggctgagaat gagcggctgc
1261tgtgcttctc accagctctg caaggccgcc ttcgagctgc ctatgagggc agtgttgcca
1321aggtctttct ggtgatgcct ccctctactc aagctgtctc ctttcagcca gagactgaca
1381atcgtgccaa cttctccagt gaccgagcct ttcatacttt taagaaacag agggatgtgt
1441tttatgaggt gctgcgagag tgggaagatc accatgagga gcctggctgg gattttgaga
1501agggcttggg cagcagaatc agggccatga tgggtcagct ctccgcagcc tgcagccaca
1561gccactttgt tcggcttttc caaaaacaac tactccagat gtgtcagagc cctggtggtg
1621ctgggggcac cgtcttgggc gaggccccag atgtgttgag tatgctggga gctgacaagc
1681tggggcggtt gtggcgccta caggaacggc ttatggctcc tcagagcagt ggggggccct
1741gcccaccccc caccttccca ggctgtcaag gcttctttag ggacttcatc cttagtgcca
1801gcagcttcca gtttaaccag catctcatgg acagtctgag cttgaagatc caggagctca
1861atggtcttgc cctgccccag catgagccca atgatgaaga cggggagtca gacgtagact
1921ggcagggtga gcggaagcaa tttgctgtgg tgcttcttag cctgagactt ttggctaaat
1981tcctgggctt tgtggctttc ctgccatacc gggggcctga acctcccccg accggtgagc
2041ttcaggactc cattctggcc ctcaggagcc aggtccctcc ggtcctggat gtgcggactc
2101tgctgcagcg agggctgcag gcccgccggg cggtgctcac cgtgccctgg ctggtggagt
2161ttctctcctt tgctgaccat gttgttccct tgctggaata ttaccgggac atcttcactc
2221tcctgctgcg cctgcaccgg agcttggtgt tgtcgcagga gagtgagggg aagatgtgtt
2281tcctgaacaa gctgctgcta cttgctgtcc tgggctggct tttccagatt cccacagtcc
2341ctgaggactt gttctttctg gaagagggtc cctcatatgc cnttgaggtg gacacagtag
2401ccccagagca tggcttggac aatgcgcctg tggtggacca gcagctgctc tacacctgct
2461gcccctacat cggagagctc cggaaactgc tcgcttcgtg ggtgtcaggc agtagtggac
2521ggagtggggg cttcatgagg aaaatcaccc ccaccactac caccagcctg ggagcccagc
2581cttcccagac cagccagggg ctgcaggcac agctcgccca ggcctttttc cacaaccagc
2641cgccctcctt gcgccggacc gtagagttcg tggcagaaag aattggatca aactgtgtca
2701aacatatcaa ggctacactg gtggcagatc tggtgcgcca ggcagagtca cttctccaag
2761agcagctggt gacacaggga gaggaagggg gagacccagc ccagctgttg gagatcttgt
2821gttcccagct gtgccctcac ggggcccagg cattggccct ggggcgggag ttctgtcaaa
2881ggaagagccc tggggctgtg cgggcgctgc ttccagagga gaccccggca gccgttctga
2941gcagtgcaga gaacattgct gtggggcttg caacagagaa agcctgtgct tggctgtcag
3001ccaacatcac agcactgatc aggagggagg tgaaagcagc agtgagtcgc acacttcgag
3061cccagggtcc tgaacctgct gcccgggggg agcggagggg ctgctcccgc gcctgtgagc
3121accatgctcc cctcccctcc cacctcatct ccgagataaa agacgtgctc tccttggccg
3181tggggccacg ggaccctgac gagggagtct ccccagagca tctggaacag ctcctaggcc
3241agctgggcca gacgctgcgg tgccgccagt tcctgtgccc acctgctgag cagcatctgg
3301caaagtgctc tgtggagtta gcttccctcc tcgttgcaga tcaaattcct atcctagggc
3361ccccggcaca gtacaggctg gagagagggc aggctcgaag gcttctgcac atgctgcttt
3421ccttgtggaa ggaagacttt caggggccgg ttccgctgca gctgctgctg agcccaagaa
3481atgtggggct tctggcagac acaaggccaa gggagtggga cttgctgcta ttcttgctac
3541gggagctggt ggagaagggt ctgatgggac ggatggagat agaggcctgc ctgggcagcc
3601tccaccaggc ccagtggcca ggggactttg ctgaagaatt agcaacactg tctaatctgt
3661ttctagccga gccccacctg ccagaacccc agctaagagc ctgtgagttg gtgcagccaa
3721accggggcac tgtgctggcc cagagctacc caactttctt gtacaaagtg gttggtaagc
3781ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
3841ggcgcgttaa gtcgacaatc aacctctgga tta

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