Construct: ORF ccsbBroad304_09865

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003214.1_s304c1, BRDN0000403616
Derived from:
ccsbBroadEn_09865
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NSUN6 (221078)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09865
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... NM_182543.5 99.8% 99.5% 1387T>C;1390G>A
2 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... NM_001351115.2 99.6% 99.3% 229_230insAGC;1384T>C;1387G>A
3 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_011519383.1 98.8% 98.5% (many diffs)
4 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... NM_001351116.2 96.5% 94.4% (many diffs)
5 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_024447884.1 96.5% 94.4% (many diffs)
6 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_011519384.1 95.7% 93.6% (many diffs)
7 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_011519385.1 95.7% 93.6% (many diffs)
8 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_011519386.2 95.7% 93.6% (many diffs)
9 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_017015907.2 95.7% 93.6% (many diffs)
10 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... NM_001351117.2 88.7% 88.4% 73_74ins156;1231T>C;1234G>A
11 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_011519387.2 88% 87.7% (many diffs)
12 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_017015911.2 78.7% 77.6% (many diffs)
13 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_017015910.2 78% 76.9% (many diffs)
14 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XR_930471.2 71.6% (many diffs)
15 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... NM_001351118.2 69.7% 69.5% 0_1ins423;964T>C;967G>A
16 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_017015913.2 69.7% 69.5% 0_1ins423;964T>C;967G>A
17 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_011519389.3 69.2% 68.9% (many diffs)
18 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XM_017015912.2 69.2% 68.9% (many diffs)
19 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XR_001747059.1 56.5% (many diffs)
20 human 221078 NSUN6 NOP2/Sun RNA methyltransfer... XR_001747060.1 40.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1473
ORF length:
1407
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tattttccct aagatatctt tgagacctga ggttgaaaac tatcttaagg
121aaggctttat gaataaggag attgtgactg ctttaggtaa acaagaagca gaaaggaagt
181ttgaaacttt gttaaagcac ctgtcacatc ctccatcatt tacaactgtc agagtgaata
241cacatttagc ctcagtacaa catgtgaaaa atctgttact tgatgaactt cagaagcagt
301ttaatggatt aagtgttcct attcttcaac atccagacct tcaagatgtg ttacttattc
361ctgttattgg acccagaaag aatattaaaa aacaacagtg tgaagccatt gttggagccc
421agtgtggcaa tgcagtttta agaggagccc atgtctatgc cccaggaatt gtgtcagcat
481cacaatttat gaaagctgga gatgttattt ctgtatactc tgatattaaa ggaaaatgta
541agaaaggagc caaagaattt gatggaacaa aagtatttct tggaaatggg atttctgaac
601taagccgcaa agaaatcttc agtggattac ctgaactgaa aggcatgggc ataagaatga
661cagaaccagt atatctcagc ccttcatttg acagtgtact gccccgttac ttatttttac
721aaaatttgcc atctgcctta gtaagtcatg tactaaatcc tcaacctgga gagaagattc
781tagacttgtg tgcagcacct ggagggaaaa caacacacat tgcagcacta atgcatgatc
841agggagaagt tatagcactg gataaaatct tcaacaaagt agaaaaaatc aaacagaatg
901ccttattgtt agggctgaat tccatcaggg cattttgttt tgatggaaca aaggcggtta
961aacttgatat ggtggaggac acagaaggag aacctccatt tctaccagaa tcctttgacc
1021gaattcttct ggatgcaccc tgtagtggaa tgggacagag accaaacatg gcctgtactt
1081ggtctgtgaa ggaagtggca tcatatcagc cattacagcg aaaactcttc actgcagcgg
1141ttcagctgct gaagccagag ggtgtgctgg tttatagcac gtgcactata acactggccg
1201aaaatgaaga acaggttgcc tgggccctga caaaatttcc ttgccttcag cttcagcccc
1261aggaaccgca gattggagga gaaggaatga ggggagctgg gctctcatgt gaacagttga
1321aacagctgca gcgatttgat ccatcggctg tgccattacc ggacactgac atggactctc
1381ttagagaggc cagaagagaa gacatgttgc gtctggctaa taaggactct ataggttttt
1441ttattgcaaa acttataaaa tgcaaaagca catacccaac tttcttgtac aaagtggttg
1501gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1561accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)