Construct: ORF ccsbBroad304_09949

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014791.1_s304c1, BRDN0000400359
Derived from:
ccsbBroadEn_09949
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HID1 (283987)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09949
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283987 HID1 HID1 domain containing NM_030630.3 99.9% 100% 1506T>C;2139T>C
2 human 283987 HID1 HID1 domain containing XM_005257226.2 99.7% 99.8% 386_387insGCA;1503T>C;2136T>C
3 human 283987 HID1 HID1 domain containing XR_001752481.2 70% (many diffs)
4 human 283987 HID1 HID1 domain containing XR_001752482.2 69.9% (many diffs)
5 human 283987 HID1 HID1 domain containing XR_001752478.2 61.4% (many diffs)
6 human 283987 HID1 HID1 domain containing XR_001752479.2 55.3% (many diffs)
7 human 283987 HID1 HID1 domain containing XR_001752480.2 55.2% (many diffs)
8 mouse 217310 Hid1 HID1 domain containing NM_175454.2 88.8% 95.6% (many diffs)
9 mouse 217310 Hid1 HID1 domain containing NM_001346774.1 88.7% 95.5% (many diffs)
10 mouse 217310 Hid1 HID1 domain containing XM_017314488.1 66.1% 71.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2430
ORF length:
2364
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gtcgaccgac tccaagctga acttccggaa ggcggtgatc cagctcacca
121ccaagacgca gcccgtggaa gccaccgatg atgccttttg ggaccagttc tgggcagaca
181cagccacctc ggtgcaggat gtgtttgcac tggtgccggc agcagagatc cgggccgtgc
241gggaagagtc accctccaac ttggccaccc tgtgctacaa ggccgttgag aagctggtgc
301agggagctga gagtggctgc cactcggaga aggagaagca gatcgtcctg aactgcagcc
361ggctgctcac ccgcgtgctg ccctacatct ttgaggaccc cgactggagg ggcttcttct
421ggtccacagt gcccggggca gggcgaggag ggcagggaga agaggatgat gagcatgcca
481ggcccctggc cgagtccctg ctcctggcca ttgctgacct gctcttctgc ccggacttca
541cggttcagag ccaccggagg agcactgtgg actcggcaga ggacgtccac tccctggaca
601gctgtgaata catctgggag gctggtgtgg gcttcgctca ctccccccag cctaactaca
661tccacgatat gaaccggatg gagctgctga aactgctgct gacatgcttc tccgaggcca
721tgtacctgcc cccagctccg gaaagtggca gcaccaaccc atgggttcag ttcttttgtt
781ccacggagaa cagacatgcc ctgcccctct tcacctccct cctcaacacc gtgtgtgcct
841atgaccctgt gggctacggg atcccctaca accacctgct cttctctgac taccgggaac
901ccctggtgga ggaggctgcc caggtgctca ttgtcacttt ggaccacgac agtgccagca
961gtgccagccc cactgtggac ggcaccacca ctggcaccgc catggatgat gccgatcctc
1021caggccctga gaacctgttt gtgaactacc tgtcccgcat ccatcgtgag gaggacttcc
1081agttcatcct caagggtata gcccggctgc tgtccaaccc cctgctccag acctacctgc
1141ctaactccac caagaagatc cagttccacc aggagctgct agttctcttc tggaagctct
1201gcgacttcaa caagaaattc ctcttcttcg tgctgaagag cagcgacgtc ctagacatcc
1261ttgtccccat cctcttcttc ctcaacgatg cccgggccga tcagtctcgg gtgggcctga
1321tgcacattgg tgtcttcatc ttgctgcttc tgagcgggga gcggaacttc ggggtgcggc
1381tgaacaaacc ctactcaatc cgcgtgccca tggacatccc agtcttcaca gggacccacg
1441ccgacctgct cattgtggtg ttccacaaga tcatcaccag cgggcaccag cggttgcagc
1501ccctcttcga ctgcctgctc accatcgtgg tcaacgtgtc cccctacctc aagagcctgt
1561ccatggtgac cgccaacaag ttgctgcacc tgctggaggc cttctccacc acctggttcc
1621tcttctctgc cgcccagaac caccacctgg tcttcttcct cctggaggtc ttcaacaaca
1681tcatccagta ccagtttgat ggcaactcca acctggtcta cgccatcatc cgcaagcgca
1741gcatcttcca ccagctggcc aacctgccca cggacccgcc caccattcac aaggccctgc
1801agcggcgccg gcggacacct gagcccttgt ctcgcaccgg ctcccaggag ggcacctcca
1861tggagggctc ccgccccgct gcccctgcag agccaggcac cctcaagacc agtctggtgg
1921ctactccagg cattgacaag ctgaccgaga agtcccaggt gtcagaggat ggcaccttgc
1981ggtccctgga acctgagccc cagcagagct tggaggatgg cagcccggct aagggggagc
2041ccagccaggc atggagggag cagcggcgac cgtccacctc atcagccagt gggcagtgga
2101gcccaacgcc agagtgggtc ctctcctgga agtcgaagct gccgctgcag accatcatga
2161ggctgctgca ggtgctggtt ccgcaggtgg agaagatctg catcgacaag ggcctgacgg
2221atgagtctga gatcctgcgg ttcctgcagc atggcaccct ggtggggctg ctgcccgtgc
2281cccaccccat cctcatccgc aagtaccagg ccaactcggg cactgccatg tggttccgca
2341cctacatgtg gggcgtcatc tatctgagga atgtggaccc ccctgtctgg tacgacaccg
2401acgtgaagct gtttgagata cagcgggtgt gcccaacttt cttgtacaaa gtggttggta
2461agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
2521ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)