Construct: ORF ccsbBroad304_09954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017753.1_s304c1, BRDN0000461274
Derived from:
ccsbBroadEn_09954
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAVIN1 (284119)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09954
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284119 CAVIN1 caveolae associated protein 1 NM_012232.6 99.9% 100% 882G>A
2 human 284119 CAVIN1 caveolae associated protein 1 XM_005257242.4 50.7% 41.7% (many diffs)
3 mouse 19285 Cavin1 caveolae associated 1 NM_008986.2 90.4% 92.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1236
ORF length:
1170
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggaccccacg ctctatattg tcgagcggcc gcttcccggg taccccgacg
121ccgaggcccc ggagccttcc tccgctgggg ctcaggcagc ggaggagccg tcgggggccg
181gctcagaaga gctgatcaag tcggaccagg tgaacggcgt gctggtgctg agcctcctgg
241acaaaatcat cggggccgta gaccagatcc agctgactca agcacagctg gaggagcggc
301aggcggagat ggagggcgca gtgcagagca tccagggcga gctgagcaag ctgggcaagg
361cgcacgccac cacgagcaat acggtgagca agctgctgga gaaggtgcgc aaggtcagcg
421tcaacgtgaa gaccgtgcgc ggcagcctgg agcgccaggc ggggcagatc aagaagctgg
481aggtcaacga ggccgagctg ctgcggcgcc gcaactttaa agtcatgatc taccaggatg
541aagtgaagct gccggccaaa ctgagcatca gcaaatcgct gaaagagtcg gaggcgctgc
601cagagaagga gggcgaggag ctgggcgagg gcgagcggcc cgaggaggac gcagcggcgc
661tggagctttc gtcggacgag gcggtggagg ttgaggaggt tattgaggag tcccgcgcag
721agcgtatcaa gcgcagcggc ctgcggcgcg tggacgactt caagaaggcc ttctccaagg
781agaagatgga gaagaccaag gtgcgtaccc gcgagaacct ggagaagacg cgcctcaaga
841ccaaggaaaa cctggagaag acgcggcaca ccctggagaa gcgcatgaac aagctgggca
901cgcgcctggt gcccgccgag cggcgcgaga aactgaagac gtcgcgagac aagttgcgca
961aatccttcac gcccgaccac gtggtgtacg cgcgctccaa gaccgcggtc tacaaggtgc
1021cacccttcac cttccacgtc aagaagatcc gcgagggcca ggtggaagtg ctcaaggcca
1081ccgagatggt ggaggtgggc gccgacgacg acgagggcgg cgcggagcgc ggggaggccg
1141gcgacctgcg gcgcgggagc agccccgacg tgcacgcgct gctggagatc accgaggagt
1201cggacgccgt gctggtggac aagagcgaca gcgactgccc aactttcttg tacaaagtgg
1261ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1321ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)