Construct: ORF ccsbBroad304_10212

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003565.1_s304c1, BRDN0000407674
Derived from:
ccsbBroadEn_10212
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GRHL3 (57822)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10212
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57822 GRHL3 grainyhead like transcripti... NM_001195010.2 99.8% 99.8% 1_3delATG
2 human 57822 GRHL3 grainyhead like transcripti... XM_011541869.1 99.8% 99.8% 1_3delATG
3 human 57822 GRHL3 grainyhead like transcripti... NM_198173.3 92.1% 92.1% 1_141del
4 human 57822 GRHL3 grainyhead like transcripti... XM_011541870.2 91.7% 91.7% 0_1ins138
5 human 57822 GRHL3 grainyhead like transcripti... NM_021180.3 91.4% 91.4% 1_156del
6 human 57822 GRHL3 grainyhead like transcripti... NM_198174.3 85% 83.7% (many diffs)
7 mouse 230824 Grhl3 grainyhead-like 3 (Drosophila) XM_006538760.3 80.5% 84.3% (many diffs)
8 mouse 230824 Grhl3 grainyhead-like 3 (Drosophila) NM_001013756.1 80.3% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1731
ORF length:
1665
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag agtcaatgga gatgatgaca gtgttgcggc cttgagcttc ctctatgatt
121actacatggg tcccaaggag aagcggatat tgtcctccag cactgggggc aggaatgacc
181aaggaaagag gtactaccat ggcatggaat atgagacgga cctcactccc cttgaaagcc
241ccacacacct catgaaattc ctgacagaga acgtgtctgg aaccccagag tacccagatt
301tgctcaagaa gaataacctg atgagcttgg agggggcctt gcccacccct ggcaaggcag
361ctcccctccc tgcaggcccc agcaagctgg aggccggctc tgtggacagc tacctgttac
421ccaccactga tatgtatgat aatggctccc tcaactcctt gtttgagagc attcatgggg
481tgccgcccac acagcgctgg cagccagaca gcaccttcaa agatgaccca caggagtcga
541tgctcttccc agatatcctg aaaacctccc cggaaccccc atgtccagag gactacccca
601gcctcaaaag tgactttgaa tacaccctgg gctcccccaa agccatccac atcaagtcag
661gcgagtcacc catggcctac ctcaacaaag gccagttcta ccccgtcacc ctgcggaccc
721cagcaggtgg caaaggcctt gccttgtcct ccaacaaagt caagagtgtg gtgatggttg
781tcttcgacaa tgagaaggtc ccagtagagc agctgcgctt ctggaagcac tggcattccc
841ggcaacccac tgccaagcag cgggtcattg acgtggctga ctgcaaagaa aacttcaaca
901ctgtggagca cattgaggag gtggcctata atgcactgtc ctttgtgtgg aacgtgaatg
961aagaggccaa ggtgttcatc ggcgtaaact gtctgagcac agacttttcc tcacaaaagg
1021gggtgaaggg tgtccccctg aacctgcaga ttgacaccta tgactgtggc ttgggcactg
1081agcgcctggt acaccgtgct gtctgccaga tcaagatctt ctgtgacaag ggagctgaga
1141ggaagatgcg cgatgacgag cggaagcagt tccggaggaa ggtcaagtgc cctgactcca
1201gcaacagtgg cgtcaagggc tgcctgctgt cgggcttcag gggcaatgag acgacctacc
1261ttcggccaga gactgacctg gagacgccac ccgtgctgtt catccccaat gtgcacttct
1321ccagcctgca gcgctctgga ggggcagccc cctcggcagg acccagcagc tccaacaggc
1381tgcctctgaa gcgtacctgc tcgcccttca ctgaggagtt tgagcctctg ccctccaagc
1441aggccaagga aggcgacctt cagagagttc tgctgtatgt gcggagggag actgaggagg
1501tgtttgacgc gctcatgttg aagaccccag acctgaaggg gctgaggaat gcgatctctg
1561agaagtatgg gttccctgaa gagaacattt acaaagtcta caagaaatgc aagcgaggaa
1621tcttagtcaa catggacaac aacatcattc agcattacag caaccacgtc gccttcctgc
1681tggacatggg ggagctggac ggcaaaattc agatcatcct taaggagctg tacccaactt
1741tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1801agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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