Construct: ORF ccsbBroad304_10260

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003782.1_s304c1, BRDN0000404477
Derived from:
ccsbBroadEn_10260
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF170 (81790)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10260
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81790 RNF170 ring finger protein 170 NM_001160224.2 56.9% 54.2% (many diffs)
2 human 81790 RNF170 ring finger protein 170 NM_001160223.1 44.9% 42% 322_395del;423_774del
3 human 81790 RNF170 ring finger protein 170 NM_030954.4 44.9% 42% 322_395del;423_774del
4 human 81790 RNF170 ring finger protein 170 XM_006716404.2 44.9% 42% 322_395del;423_774del
5 human 81790 RNF170 ring finger protein 170 XM_011544666.3 44.9% 42% 322_395del;423_774del
6 human 81790 RNF170 ring finger protein 170 XM_017013881.1 44.9% 42% 322_395del;423_774del
7 human 81790 RNF170 ring finger protein 170 XM_006716405.3 38.8% 28.3% 134_135ins76;273_624del
8 human 81790 RNF170 ring finger protein 170 XR_001745605.1 9.6% 1_56del;405_3619del
9 human 81790 RNF170 ring finger protein 170 NR_027669.2 9.4% 1_129del;478_3690del
10 human 81790 RNF170 ring finger protein 170 NR_027668.2 8.8% 1_359del;708_3920del
11 human 81790 RNF170 ring finger protein 170 XR_001745604.2 8.7% 1_247del;570_720del;747_3961del
12 human 81790 RNF170 ring finger protein 170 XR_002956648.1 8.4% 1_409del;732_882del;909_4123del
13 human 81790 RNF170 ring finger protein 170 XR_001745606.1 7.2% (many diffs)
14 human 81790 RNF170 ring finger protein 170 XR_002956649.1 6.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
414
ORF length:
348
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc caaatatcaa ggtgaagttc aaagtttgaa actggatgat gattcagtta
121tagaaggagt aagcgaccaa gtacttgtgg cagttgtggt cagtttcgct ttgattgcta
181ccctggtata tgcacttttc agaaatgtac atcaaaacat tcacccagaa aaccaggagc
241tagtaagggt acttcgagaa cagcttcaaa cagaacagga tgcacctgct gccactcgac
301agcagttcta cactgacatg tactgtccca tctgcctgca ccaagcctcc ttcccggtgg
361agaccaactg tggacatctt ttttgtggta accttactcc taacagtatt tggtgcccaa
421ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
481cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)