Construct: ORF ccsbBroad304_10396

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011107.1_s304c1, BRDN0000409672
Derived from:
ccsbBroadEn_10396
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC541473 (541473)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10396
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8468 FKBP6 FKBP prolyl isomerase 6 XM_017012742.1 40% 34.7% (many diffs)
2 human 541473 LOC541473 FKBP prolyl isomerase 6 pse... NR_003602.3 38.7% 1_180del;574_1013del
3 human 8468 FKBP6 FKBP prolyl isomerase 6 NM_001362789.2 37.8% 34.8% (many diffs)
4 human 8468 FKBP6 FKBP prolyl isomerase 6 NM_003602.5 36.3% 33.4% (many diffs)
5 human 8468 FKBP6 FKBP prolyl isomerase 6 XM_017012741.1 33.8% 29.3% (many diffs)
6 human 8468 FKBP6 FKBP prolyl isomerase 6 NM_001135211.3 33.2% 28.9% (many diffs)
7 human 100101148 LOC100101148 FKBP prolyl isomerase 6 pse... NR_104007.1 31.3% 1_132del;306_307ins90;436_875del
8 human 8468 FKBP6 FKBP prolyl isomerase 6 NM_001281304.2 27.5% 25% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
459
ORF length:
393
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gggaagcgcg ttaaaccagg gagtcctgga aggggacgac gcccccggcc
121agtccctgta cgagcggtta agtcagagga tgctggacat ctcgggggac cggggcgtgc
181tgaaggacgt catccgagaa ggagctggag acctagtggc gcctgatgct tcggtgctag
241tgaaatacta tggatacctg gaacacttgg acagaccctt cgattctaat tactttagga
301aaactcctcg gctaatgaaa cttggagagg atattacatt gtggggcatg gagctgggcc
361ttctgagcat gcagagagga gagctggcca gatgcttcgt cttgggtaaa ctcctcgact
421cccaaggccc cagcctccat ctttacctca gagcctcctg cccaactttc ttgtacaaag
481tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
541gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)