Transcript: Human NM_003602.5

Homo sapiens FKBP prolyl isomerase 6 (FKBP6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
FKBP6 (8468)
Length:
1699
CDS:
269..1252

Additional Resources:

NCBI RefSeq record:
NM_003602.5
NBCI Gene record:
FKBP6 (8468)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003602.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157286 GCTAGCTGTTACAGGGACTAT pLKO.1 1157 CDS 100% 4.950 6.930 N FKBP6 n/a
2 TRCN0000151294 GTTTCTGTTCAAACCGAACTA pLKO.1 595 CDS 100% 4.950 6.930 N FKBP6 n/a
3 TRCN0000151371 GAATCGTTTCTATGATGCCAA pLKO.1 820 CDS 100% 2.640 3.696 N FKBP6 n/a
4 TRCN0000152716 CGCCAGAATCGTTTCTATGAT pLKO.1 815 CDS 100% 5.625 4.500 N FKBP6 n/a
5 TRCN0000158077 CGCAGCTACTGACAAGTAGAA pLKO.1 1462 3UTR 100% 0.495 0.396 N FKBP6 n/a
6 TRCN0000151638 CAACACCAATAGAGATTGCTT pLKO.1 1587 3UTR 100% 3.000 2.100 N FKBP6 n/a
7 TRCN0000152445 CAGGCTTTGATCATTGACCAA pLKO.1 998 CDS 100% 2.640 1.848 N FKBP6 n/a
8 TRCN0000157579 GAAAGAAATGTGGCACCGCAT pLKO.1 1189 CDS 100% 2.160 1.512 N FKBP6 n/a
9 TRCN0000151715 CAAGTAGAACACTGCTACTTT pLKO.1 1474 3UTR 100% 0.563 0.394 N FKBP6 n/a
10 TRCN0000155292 GACAGACCCTTCGATTCTAAT pLKO.1 473 CDS 100% 13.200 6.600 Y LOC541473 n/a
11 TRCN0000156760 GATGCTTCGGTGCTAGTGAAA pLKO.1 428 CDS 100% 4.950 2.475 Y LOC541473 n/a
12 TRCN0000157112 GTTAAGTCAGAGGATGCTGGA pLKO.1 340 CDS 100% 2.160 1.080 Y LOC541473 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003602.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01934 pDONR223 100% 99.8% 100% None 594A>G n/a
2 ccsbBroad304_01934 pLX_304 0% 99.8% 100% V5 594A>G n/a
3 TRCN0000466232 TCAATGTACTGGCAAAGTAGGCAC pLX_317 45.2% 99.8% 100% V5 594A>G n/a
4 ccsbBroadEn_10396 pDONR223 100% 36.3% 33.4% None (many diffs) n/a
5 ccsbBroad304_10396 pLX_304 0% 36.3% 33.4% V5 (many diffs) n/a
6 TRCN0000472526 ATGAGTTGGTGCCATGCCCTAGTT pLX_317 100% 36.3% 33.4% V5 (many diffs) n/a
7 ccsbBroadEn_13708 pDONR223 100% 27.5% 25% None (many diffs) n/a
8 ccsbBroad304_13708 pLX_304 0% 27.5% 25% V5 (many diffs) n/a
9 TRCN0000469664 TTGCTGAACACTAGGTTCTGGTGT pLX_317 100% 27.5% 25% V5 (many diffs) n/a
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