Construct: ORF ccsbBroad304_10668
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017812.1_s304c1, BRDN0000404307
- Derived from:
- ccsbBroadEn_10668
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AAMP (14)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10668
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 14 | AAMP | angio associated migratory ... | NM_001087.5 | 89.4% | 89.4% | 1_138del |
| 2 | human | 14 | AAMP | angio associated migratory ... | NM_001302545.2 | 89.1% | 89.1% | 1_141del |
| 3 | human | 14 | AAMP | angio associated migratory ... | XM_024452712.1 | 69.6% | 70% | 1_138del;1072_1267del;1377_1378ins121 |
| 4 | mouse | 227290 | Aamp | angio-associated migratory ... | XM_006495958.3 | 81.8% | 89% | (many diffs) |
| 5 | mouse | 227290 | Aamp | angio-associated migratory ... | XM_006495957.3 | 81.7% | 88.8% | (many diffs) |
| 6 | mouse | 227290 | Aamp | angio-associated migratory ... | NM_146110.3 | 80.7% | 87.8% | (many diffs) |
| 7 | mouse | 227290 | Aamp | angio-associated migratory ... | NM_001190444.1 | 80.5% | 87.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1230
- ORF length:
- 1164
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga agatgtggac tttgaggaag aagaggagga agagggcaac gaagagggct 121 gggttctaga accccaggaa ggggtggtcg gcagcatgga gggccccgac gatagcgagg 181 tcacctttgc attgcactca gcatctgtgt tttgtgtgag cctggacccc aagaccaata 241 ccttggcagt gaccgggggt gaagatgaca aagccttcgt atggcggctc agcgatgggg 301 agctgctctt tgagtgtgca ggccataaag actctgtgac ttgtgctggt ttcagccatg 361 actccactct agtggccaca ggggacatga gtggcctctt gaaagtgtgg caggtggaca 421 ctaaggagga ggtctggtcc tttgaagcgg gagacctgga gtggatggag tggcatcctc 481 gggcacctgt cctgttggcg ggcacagctg acggcaacac ctggatgtgg aaagtcccga 541 atggtgactg caagaccttc cagggtccca actgcccagc cacctgtggc cgagtcctcc 601 ctgatgggaa gagagctgtg gtaggctatg aagatgggac catcaggatt tgggacctga 661 agcagggaag ccctatccat gtactgaaag ggactgaggg tcaccagggc ccactcacct 721 gtgttgctgc caaccaggat ggcagcttga tcctaactgg ctctgtggac tgccaggcca 781 agctggtcag tgccaccacc ggcaaggtgg tgggtgtttt tagacctgag actgtggcct 841 cccagcccag cctgggagaa ggggaggaga gtgagtccaa ctcggtggag tccttgggct 901 tctgcagtgt gatgcccctg gcagctgttg gctacctgga tgggaccttg gccatctatg 961 acctggctac gcagactctt aggcatcagt gtcagcacca gtcgggcatc gtgcagctgc 1021 tgtgggaggc aggcactgcc gtggtatata cctgcagcct ggatggcatc gtgcgcctct 1081 gggacgcccg gaccggccgc ctgcttactg actaccgggg ccacacggct gagatcctgg 1141 actttgccct cagcaaagat gcctccctgg tggtgaccac gtcaggagac cacaaagcga 1201 aagtattttg tgtccaaagg cctgaccgtt acccaacttt cttgtacaaa gtggttggta 1261 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 1321 ggtggcgcgt taagtcgaca atcaacctct ggatta