Construct: ORF ccsbBroad304_10760

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003225.1_s304c1, BRDN0000408073
Derived from:
ccsbBroadEn_10760
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTNND1 (1500)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10760
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1500 CTNND1 catenin delta 1 NM_001085467.2 73.2% 73.1% 1_666del;1257C>T;2423G>A
2 human 1500 CTNND1 catenin delta 1 NM_001085468.2 73.2% 73.1% 1_666del;1257C>T;2423G>A
3 human 1500 CTNND1 catenin delta 1 NM_001085469.2 73.2% 73.1% 1_666del;1257C>T;2423G>A
4 human 1500 CTNND1 catenin delta 1 NM_001206890.2 73.2% 73.1% 1_666del;1257C>T;2423G>A
5 human 1500 CTNND1 catenin delta 1 NM_001085466.2 72.7% 72.6% (many diffs)
6 human 1500 CTNND1 catenin delta 1 NM_001085464.2 70.7% 70.4% (many diffs)
7 human 1500 CTNND1 catenin delta 1 NM_001085463.2 70.2% 70% (many diffs)
8 human 1500 CTNND1 catenin delta 1 NM_001206888.2 69.3% 69.2% 1_807del;1398C>T;2564G>A
9 human 1500 CTNND1 catenin delta 1 NM_001206889.2 69.3% 69.2% 1_807del;1398C>T;2564G>A
10 human 1500 CTNND1 catenin delta 1 NM_001206891.2 69.3% 69.2% 1_807del;1398C>T;2564G>A
11 human 1500 CTNND1 catenin delta 1 NM_001206884.2 68.8% 68.8% (many diffs)
12 human 1500 CTNND1 catenin delta 1 NM_001085465.2 68.2% 68% (many diffs)
13 human 1500 CTNND1 catenin delta 1 NM_001206886.2 67% 66.8% (many diffs)
14 human 1500 CTNND1 catenin delta 1 NM_001206883.2 66.6% 66.4% (many diffs)
15 human 1500 CTNND1 catenin delta 1 NM_001085460.2 65.3% 65.2% 1_969del;1560C>T;2726G>A
16 human 1500 CTNND1 catenin delta 1 NM_001085461.2 65.3% 65.2% 1_969del;1560C>T;2726G>A
17 human 1500 CTNND1 catenin delta 1 NM_001085462.2 65.3% 65.2% 1_969del;1560C>T;2726G>A
18 human 1500 CTNND1 catenin delta 1 NM_001206885.2 64.8% 64.8% (many diffs)
19 human 1500 CTNND1 catenin delta 1 NM_001206887.2 64.7% 64.5% (many diffs)
20 human 1500 CTNND1 catenin delta 1 NM_001085459.2 63.3% 63% (many diffs)
21 human 1500 CTNND1 catenin delta 1 NM_001085458.2 62.9% 62.7% (many diffs)
22 human 1500 CTNND1 catenin delta 1 NM_001331.3 61.1% 60.9% (many diffs)
23 human 100528016 TMX2-CTNND1 TMX2-CTNND1 readthrough (NM... NR_037646.1 29.2% (many diffs)
24 mouse 12388 Ctnnd1 catenin (cadherin associate... NM_001085449.1 66% 71.2% (many diffs)
25 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_017315210.1 63.8% 68.9% (many diffs)
26 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498639.3 63.4% 68.2% (many diffs)
27 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_017315206.1 59% 63.6% (many diffs)
28 mouse 12388 Ctnnd1 catenin (cadherin associate... NM_001085450.1 58.6% 63.2% (many diffs)
29 mouse 12388 Ctnnd1 catenin (cadherin associate... NM_007615.4 58.6% 63.2% (many diffs)
30 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498635.1 58.6% 63.2% (many diffs)
31 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_017315201.1 58.6% 63.2% (many diffs)
32 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498636.2 58.5% 63.1% (many diffs)
33 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498632.2 57.2% 61.5% (many diffs)
34 mouse 12388 Ctnnd1 catenin (cadherin associate... NM_001085453.1 56.9% 61.5% (many diffs)
35 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498631.2 56.9% 61.2% (many diffs)
36 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498625.2 56.8% 61.1% (many diffs)
37 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498626.3 56.8% 61.1% (many diffs)
38 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498628.3 56.8% 61.1% (many diffs)
39 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498630.1 56.8% 61.1% (many diffs)
40 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_017315179.1 56.8% 61.1% (many diffs)
41 mouse 12388 Ctnnd1 catenin (cadherin associate... NM_001085448.1 56.5% 61.1% (many diffs)
42 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_017315208.1 56.5% 61.1% (many diffs)
43 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498638.1 56.4% 61% (many diffs)
44 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498634.2 55.1% 59.4% (many diffs)
45 mouse 12388 Ctnnd1 catenin (cadherin associate... XM_006498633.2 54.8% 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1896
ORF length:
1830
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat tggtgaggag gtgccatcgg atcaatacta ctgggctcct ttggcccagc
121atgagcgagg aagtttagca agcttggata gcctgcgcaa aggagggcct ccacctccta
181attggagaca gccagagctg ccagaggtga tcgccatgct tggattccgc ttggatgctg
241tcaagtccaa tgcagctgca tacctgcaac acttatgcta ccgcaatgac aaggtgaaga
301ctgacgtgcg gaagctcaag ggcatcccag tactggtggg attgttagac catcccaaaa
361aggaagtgca ccttggagcc tgtggagctc tcaagaatat ctcttttgga cgtgaccagg
421ataacaagat tgccataaaa aactgtgatg gtgtgcctgc ccttgtgcga ttgcttcgaa
481aggctcgtga tatggacctt actgaagtta ttaccggaac cctgtggaat ctttcatccc
541atgactcaat caaaatggag attgtggacc atgcactgca tgccttgaca gatgaagtga
601tcattcctca ttctggttgg gagcgggaac ctaatgaaga ctgtaagcca cgccatattg
661agtgggaatc ggtgctcacc aacacagctg gctgccttag gaatgtaagc tcagagagga
721gtgaagctcg ccggaaactt cgggaatgtg atggtttagt tgatgccctc attttcattg
781ttcaggctga gattgggcag aaggattcag acagcaagct tgtagagaac tgtgtttgcc
841ttcttcggaa cttatcatat caagttcacc gggagatccc acaggcagag cgttaccaag
901aggcagctcc caatgttgcc aacaatactg ggccacatgc tgccagttgc tttggggcca
961agaagggcaa agggaaaaaa cctatagagg atccagcaaa cgatacagtg gatttcccta
1021aaagaacgag tccagctcga ggctatgagc tcttatttca gccagaggtg gttcggatat
1081acatctcact tcttaaggag agcaagactc ctgccatcct agaagcctca gctggagcta
1141tccagaactt gtgtgctggg cgctggacgt atggtcgata catccgctct gctctgcgtc
1201aagagaaggc tctttctgcc atagctgacc tcctgactaa tgaacatgaa cgggtggtga
1261aagctgcatc tggagcactg agaaacctgg ctgtggatgc tcgcaacaaa gaattaattg
1321gtaaacatgc tattcctaac ttggtaaaga atctgccagg aggacagcag aactcctctt
1381ggaatttctc tgaggacact gtcatctcta ttttgaacac tatcaacgag gttatcgctg
1441agaacttgga ggctgccaaa aagcttcgag agacacaggg tattgagaag ctggtgttga
1501tcaacaaatc agggaaccgc tcagaaaaag aagttcgagc agcagcactt gtattacaga
1561caatctgggg atataaggaa ctgcggaagc cactggaaaa agaaggatgg aagaaatcag
1621actttcaggt gaatctaaac aatgcttccc gaagccagag cagtcattca tatgatgata
1681gtactctccc tctcattgac cggaaccaaa aatcagataa gaaacctgat cgggaagaaa
1741ttcagatgag caatatggga tcaaacacaa aatcactaga taacaactat tccacaccaa
1801atgagagagg agaccacaat aaaacactgg atcgatcggg ggatctaggc gacatggagc
1861cattgaaggg aacaacaccc ttgatgcaga agatttaccc aactttcttg tacaaagtgg
1921ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1981ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)