Construct: ORF ccsbBroad304_10985

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003230.1_s304c1, BRDN0000411485
Derived from:
ccsbBroadEn_10985
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPP1R12B (4660)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10985
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4660 PPP1R12B protein phosphatase 1 regul... NM_001167858.1 36.6% 36.5% 424_425delTAinsAG;427_1158del
2 human 4660 PPP1R12B protein phosphatase 1 regul... NM_001167857.1 27.4% 27.3% 424_425delTAinsAG;427_1545del
3 human 4660 PPP1R12B protein phosphatase 1 regul... XM_005245206.4 25.2% 25.1% 424_425delTAinsAG;427_1680del
4 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001351.1 25.2% 25.1% 424_425delTAinsAG;427_1680del
5 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737202.1 17.8% 1_150del;574_575delTAinsAG;577_2370del
6 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737199.1 14.4% 1_150del;574_575delTAinsAG;577_2929del
7 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001348.1 14.4% 14.3% 424_425delTAinsAG;427_2943del
8 human 4660 PPP1R12B protein phosphatase 1 regul... NM_002481.4 14.3% 14.3% 424_425delTAinsAG;427_2946del
9 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001347.1 14.1% 14.1% 424_425delTAinsAG;427_2991del
10 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001346.1 14.1% 14.1% 424_425delTAinsAG;427_2994del
11 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737196.2 13.8% 1_150del;574_575delTAinsAG;577_3053del
12 human 4660 PPP1R12B protein phosphatase 1 regul... XR_002956646.1 13.7% 1_150del;574_575delTAinsAG;577_3073del
13 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001345.1 13.5% 13.5% 424_425delTAinsAG;427_3126del
14 human 4660 PPP1R12B protein phosphatase 1 regul... NM_001331029.2 13.5% 13.5% 424_425delTAinsAG;427_3129del
15 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737195.1 13.4% 1_150del;574_575delTAinsAG;577_3159del
16 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001343.1 13.3% 13.3% 424_425delTAinsAG;427_3174del
17 human 4660 PPP1R12B protein phosphatase 1 regul... XM_017001342.1 13.3% 13.3% 424_425delTAinsAG;427_3177del
18 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737201.2 4.4% 1_150del;574_575delTAinsAG;577_9566del
19 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737198.1 3.7% 1_150del;574_575delTAinsAG;577_11252del
20 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737200.1 3.7% 1_150del;574_575delTAinsAG;577_11252del
21 human 4660 PPP1R12B protein phosphatase 1 regul... XR_001737197.1 3.7% 1_150del;574_575delTAinsAG;577_11435del
22 mouse 329251 Ppp1r12b protein phosphatase 1, regu... XR_387177.3 16% (many diffs)
23 mouse 329251 Ppp1r12b protein phosphatase 1, regu... XM_017321278.1 14.3% 14.7% (many diffs)
24 mouse 329251 Ppp1r12b protein phosphatase 1, regu... XM_006529710.2 13.5% 13.9% (many diffs)
25 mouse 329251 Ppp1r12b protein phosphatase 1, regu... NM_001081307.1 13.3% 13.7% (many diffs)
26 mouse 329251 Ppp1r12b protein phosphatase 1, regu... XM_006529709.3 13.3% 13.7% (many diffs)
27 mouse 329251 Ppp1r12b protein phosphatase 1, regu... XM_017321277.1 12.7% 13.1% (many diffs)
28 mouse 329251 Ppp1r12b protein phosphatase 1, regu... XM_006529707.3 12.5% 12.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
492
ORF length:
426
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggaactggag cacctaggag ggaagcgggc agagtcggcg cgaatgcggc
121gggcagagca gcttcggcgc tggcggggct cgctgacaga gcaggagcct gcggagcgac
181gaggcgcggg gcggcagccg ctgaccaggc gcgggagccc cagggtccgc ttcgaggacg
241gtgctgtctt tctggccgcc tgctctagcg gggacaccga cgaggtgaga aagcttctgg
301caagaggtgc tgatatcaac acggtcaacg tggacggctt gacagccctg caccaggcat
361gtattgatga aaatttggac atggtgaagt ttctggtgga gaacagagcc aatgtaaacc
421agcaagacaa cgagggctgg acaccccttc atgcagcagc ttcctgtggc tatctcaaca
481tagcagagag ttgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
541tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
601caatcaacct ctggatta

Download FASTA (ORF) (Full)