Construct: ORF ccsbBroad304_11132

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014096.1_s304c1, BRDN0000406492
Derived from:
ccsbBroadEn_11132
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ST3GAL4 (6484)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11132
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001254757.2 100% 100%
2 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001254758.1 100% 100%
3 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001348399.2 100% 100%
4 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... XM_024448658.1 100% 100%
5 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... XM_024448659.1 100% 100%
6 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... XM_024448660.1 100% 100%
7 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001254759.2 99.1% 98.1% (many diffs)
8 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001348400.2 98.7% 98.4% 89_90insGTACATCGAGCT
9 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_006278.3 98.7% 98.4% 89_90insGTACATCGAGCT
10 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001348396.2 94% 94% 1_63del
11 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001348397.2 94% 94% 1_63del
12 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NM_001348398.2 79.1% 73.2% 89_90insGTACATCGAGCT;756_757ins82;906_1050del
13 human 6484 ST3GAL4 ST3 beta-galactoside alpha-... NR_145671.2 50.3% 1_217del;986_1160del;1392_1985del
14 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... NM_009178.4 86.4% 89.4% (many diffs)
15 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_011242433.1 86.4% 89.4% (many diffs)
16 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_011242432.2 81.3% 84.1% (many diffs)
17 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_006510111.3 78.8% 81.6% (many diffs)
18 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_006510112.3 78.8% 81.6% (many diffs)
19 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_006510113.3 78.8% 81.6% (many diffs)
20 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_011242429.2 78.8% 81.6% (many diffs)
21 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_006510110.3 78.4% 81.1% (many diffs)
22 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_006510109.3 77.8% 80.5% (many diffs)
23 mouse 20443 St3gal4 ST3 beta-galactoside alpha-... XM_006510108.2 77.1% 79.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1065
ORF length:
999
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt cagcaagtcc cgctggaagc tcctggccat gttggctctg gtcctggtcg
121tcatggtgtg gtattccatc tcccgggaag acaggtacat cgagcttttt tattttccca
181tcccagagaa gaaggagccg tgcctccagg gtgaggcaga gagcaaggcc tctaagctct
241ttggcaacta ctcccgggat cagcccatct tcctgcggct tgaggattat ttctgggtca
301agacgccatc tgcttacgag ctgccctatg ggaccaaggg gagtgaggat ctgctcctcc
361gggtgctagc catcaccagc tcctccatcc ccaagaacat ccagagcctc aggtgccgcc
421gctgtgtggt cgtggggaac gggcaccggc tgcggaacag ctcactggga gatgccatca
481acaagtacga tgtggtcatc agattgaaca atgccccagt ggctggctat gagggtgacg
541tgggctccaa gaccaccatg cgtctcttct accctgaatc tgcccacttc gaccccaaag
601tagaaaacaa cccagacaca ctcctcgtcc tggtagcttt caaggcaatg gacttccact
661ggattgagac catcctgagt gataagaagc gggtgcgaaa gggtttctgg aaacagcctc
721ccctcatctg ggatgtcaat cctaaacaga ttcggattct caaccccttc ttcatggaga
781ttgcagctga caaactgctg agcctgccaa tgcaacagcc acggaagatt aagcagaagc
841ccaccacggg cctgttggcc atcacgctgg ccctccacct ctgtgacttg gtgcacattg
901ccggctttgg ctacccagac gcctacaaca agaagcagac cattcactac tatgagcaga
961tcacgctcaa gtccatggcg gggtcaggcc ataatgtctc ccaagaggcc ctggccatta
1021agcggatgct ggagatggga gctatcaaga acctcacgtc cttctgccca actttcttgt
1081acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1141gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)