Construct: ORF ccsbBroad304_11150
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001302.1_s304c1, BRDN0000402918
- Derived from:
- ccsbBroadEn_11150
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SP2 (6668)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11150
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6668 | SP2 | Sp2 transcription factor | XM_024450892.1 | 39.5% | 38.2% | (many diffs) |
| 2 | human | 6668 | SP2 | Sp2 transcription factor | NM_003110.6 | 39% | 37.8% | (many diffs) |
| 3 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722025.2 | 36.3% | 35.1% | (many diffs) |
| 4 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722026.2 | 36.3% | 35.1% | (many diffs) |
| 5 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722027.2 | 36.3% | 35.1% | (many diffs) |
| 6 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525142.1 | 36.3% | 35.1% | (many diffs) |
| 7 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525143.1 | 36.3% | 35.1% | (many diffs) |
| 8 | human | 6668 | SP2 | Sp2 transcription factor | XM_017024968.1 | 36.3% | 35.1% | (many diffs) |
| 9 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722023.2 | 35.9% | 34.7% | (many diffs) |
| 10 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525140.2 | 33.4% | 32.3% | (many diffs) |
| 11 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525139.2 | 32.9% | 31.9% | (many diffs) |
| 12 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525138.2 | 31.5% | 30.5% | (many diffs) |
| 13 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525137.2 | 31.2% | 30.2% | (many diffs) |
| 14 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525136.2 | 31.1% | 30% | (many diffs) |
| 15 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534518.3 | 33.8% | 34% | (many diffs) |
| 16 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534519.3 | 33.8% | 34% | (many diffs) |
| 17 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534520.3 | 33.8% | 34% | (many diffs) |
| 18 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534521.3 | 33.8% | 34% | (many diffs) |
| 19 | mouse | 78912 | Sp2 | Sp2 transcription factor | NM_001080964.1 | 33.5% | 33.7% | (many diffs) |
| 20 | mouse | 78912 | Sp2 | Sp2 transcription factor | NM_030220.3 | 33.4% | 33.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 813
- ORF length:
- 747
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc tgccactgct gctgtgagtc ccagtgacta cctgcagcct gccgcctcca 121 ccacccagga ctcccagcca tctcccttag ccctgcttgc tgcaacatgt agcaaaattg 181 gccctccagc agttgaagct gctgtgacac ctcctgctcc cccacagccc acaccgcgga 241 aacttgtccc tatcaaacct gcccctctcc ctctcagccc cggcaagaat agctttggaa 301 tcttgtcctc caaaggaaat atacttcaga ttcaggggtc acaactgagc gcctcctatc 361 ctggagggca gctggtgttc gctatccaga atcccaccat gatcaacaaa gggacccgat 421 caaatgccaa tatccagtac caggcggtcc ctcagattca ggcaagcaat tcccaaacca 481 tccaagtaca gcccaatctc accaaccaga tccagatcat ccctggcacc aaccaagcca 541 tcatcacccc ctcaccgtcc agtcacaagc ctgtccccat caagccagcc cccatccaga 601 agtcgagtac gaccaccacc cccgtgcaga gcggggccaa tgtggtgaag ttgacaggtg 661 ggggcggcaa tgtgacgctc actctgcccg tcaacaacct cgtgaacgcc agtgacaccg 721 gggcccctac tcagctcctc actgcttcct gccaaactgg gatgctgaat tcaacaagaa 781 tgttcttatt tttggcattt attaatgtgc tctacccaac tttcttgtac aaagtggttg 841 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 901 accggtggcg cgttaagtcg acaatcaacc tctggatta