Construct: ORF ccsbBroad304_11151

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001616.1_s304c1, BRDN0000400508
Derived from:
ccsbBroadEn_11151
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SP2 (6668)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11151
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6668 SP2 Sp2 transcription factor XM_024450892.1 99% 99.1% 586C>T;636T>C;1804_1818del
2 human 6668 SP2 Sp2 transcription factor NM_003110.6 97.9% 98% (many diffs)
3 human 6668 SP2 Sp2 transcription factor XM_006722025.2 90.9% 91% 586C>T;636T>C;1804_1980del
4 human 6668 SP2 Sp2 transcription factor XM_006722026.2 90.9% 91% 586C>T;636T>C;1804_1980del
5 human 6668 SP2 Sp2 transcription factor XM_006722027.2 90.9% 91% 586C>T;636T>C;1804_1980del
6 human 6668 SP2 Sp2 transcription factor XM_011525142.1 90.9% 91% 586C>T;636T>C;1804_1980del
7 human 6668 SP2 Sp2 transcription factor XM_011525143.1 90.9% 91% 586C>T;636T>C;1804_1980del
8 human 6668 SP2 Sp2 transcription factor XM_017024968.1 90.9% 91% 586C>T;636T>C;1804_1980del
9 human 6668 SP2 Sp2 transcription factor XM_006722023.2 90% 90.1% (many diffs)
10 human 6668 SP2 Sp2 transcription factor XM_011525140.2 83.7% 83.8% (many diffs)
11 human 6668 SP2 Sp2 transcription factor XM_011525139.2 82.5% 82.6% (many diffs)
12 human 6668 SP2 Sp2 transcription factor XM_011525138.2 78.9% 79% (many diffs)
13 human 6668 SP2 Sp2 transcription factor XM_011525137.2 78.1% 78.2% (many diffs)
14 human 6668 SP2 Sp2 transcription factor XM_011525136.2 77.8% 77.9% (many diffs)
15 mouse 78912 Sp2 Sp2 transcription factor XM_006534518.3 88% 93% (many diffs)
16 mouse 78912 Sp2 Sp2 transcription factor XM_006534519.3 88% 93% (many diffs)
17 mouse 78912 Sp2 Sp2 transcription factor XM_006534520.3 88% 93% (many diffs)
18 mouse 78912 Sp2 Sp2 transcription factor XM_006534521.3 88% 93% (many diffs)
19 mouse 78912 Sp2 Sp2 transcription factor NM_001080964.1 87.3% 92.3% (many diffs)
20 mouse 78912 Sp2 Sp2 transcription factor NM_030220.3 87.1% 92.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1869
ORF length:
1803
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgccactgct gctgtgagtc ccagtgacta cctgcagcct gccgcctcca
121ccacccagga ctcccagcca tctcccttag ccctgcttgc tgcaacatgt agcaaaattg
181gccctccagc agttgaagct gctgtgacac ctcctgctcc cccacagccc acaccgcgga
241aacttgtccc tatcaaacct gcccctctcc ctctcagccc cggcaagaat agctttggaa
301tcttgtcctc caaaggaaat atacttcaga ttcaggggtc acaactgagc gcctcctatc
361ctggagggca gctggtgttc gctatccaga atcccaccat gatcaacaaa gggacccgat
421caaatgccaa tatccagtac caggcggtcc ctcagattca ggcaagcaat tcccaaacca
481tccaagtaca gcccaatctc accaaccaga tccagatcat ccctggcacc aaccaagcca
541tcatcacccc ctcaccgtcc agtcacaagc ctgtccccat caagccagcc cccatccaga
601agtcgagtac gaccaccacc cccgtgcaga gcggggccaa tgtggtgaag ttgacaggtg
661ggggcggcaa tgtgacgctc actctgcccg tcaacaacct cgtgaacgcc agtgacaccg
721gggcccctac tcagctcctc actgaaagcc ccccaacccc gctgtctaag actaacaaga
781aagcaaggaa gaagagcctt cctgcctccc agccccctgt ggctgtggct gagcaggtgg
841agacggtgct gatcgagacc accgcggaca acatcatcca ggcaggaaat aacctgctca
901ttgttcagag ccctggtggg ggccagccag ctgtggtcca gcaggtccag gtggtgcccc
961ccaaggccga gcagcagcag gtggtacaga tcccccagca ggctctgcgg gtggtgcagg
1021cggcatctgc caccctcccc actgtacccc agaagccctc ccagaacttt cagatccagg
1081cagctgagcc gacacctact caggtctaca tccgcacgcc ttccggtgag gtgcagacag
1141tccttgtcca ggacagcccc ccagcaacag ctgcagccac ctctaacacc acctgtagca
1201gccctgcatc ccgtgctccc catctgagtg ggaccagcaa aaagcactca gctgcaattc
1261tccgaaaaga gcgtcccctg ccaaagattg ccccagccgg gagcatcatc agcctgaatg
1321cagcccagtt ggcggcagct gcccaggcaa tgcagaccat caacatcaat ggtgtccagg
1381tccagggcgt gcctgtcacc atcaccaaca caggcgggca gcagcagctg acagtgcaga
1441atgtttctgg gaacaacctg accatcagtg ggctgagccc cacccagatc cagctgcaaa
1501tggaacaagc cctggccgga gagacccagc ccggggagaa gcggcgccgc atggcctgca
1561cgtgtcccaa ctgcaaggat ggggagaaga ggtctggaga gcagggcaag aagaagcacg
1621tgtgccacat ccccgactgt ggcaagacgt tccgtaagac gtccttgctg cgtgcccatg
1681tgcgcctgca cactggcgag cggccctttg tctgcaactg gttcttctgt gggaagaggt
1741tcacacggag tgacgagctc caacggcatg ctcgcaccca cacaggggac aaacgcttcg
1801agtgcgccca gtgtcagaag cgcttcatga ggagtgacca cctcaccaag cattacaaga
1861cccacctggt cacgaagaac ttgtacccaa ctttcttgta caaagtggtt ggtaagccta
1921tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1981gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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