Construct: ORF ccsbBroad304_11211
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004579.1_s304c1, BRDN0000406865
- Derived from:
- ccsbBroadEn_11211
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UBE3A (7337)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11211
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354546.2 | 71.9% | 71.9% | 1_684del |
2 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354550.2 | 70.4% | 57.8% | (many diffs) |
3 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354506.2 | 68.6% | 68.6% | 1_801del |
4 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354507.2 | 68.6% | 68.6% | 1_801del |
5 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354508.2 | 68.6% | 68.6% | 1_801del |
6 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354509.2 | 68.6% | 68.6% | 1_801del |
7 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354511.2 | 68.6% | 68.6% | 1_801del |
8 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354512.2 | 68.6% | 68.6% | 1_801del |
9 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354513.2 | 68.6% | 68.6% | 1_801del |
10 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354523.2 | 68.6% | 68.6% | 1_801del |
11 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354526.1 | 68.6% | 68.6% | 1_801del |
12 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354539.2 | 68.6% | 68.6% | 1_801del |
13 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354540.2 | 68.6% | 68.6% | 1_801del |
14 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354541.2 | 68.6% | 68.6% | 1_801del |
15 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354542.2 | 68.6% | 68.6% | 1_801del |
16 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354543.2 | 68.6% | 68.6% | 1_801del |
17 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354544.2 | 68.6% | 68.6% | 1_801del |
18 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001374461.1 | 68.6% | 68.6% | 1_801del |
19 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_130838.4 | 68.6% | 68.6% | 1_801del |
20 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354551.2 | 68.4% | 57.7% | (many diffs) |
21 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354505.1 | 67% | 67% | 1_861del |
22 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354538.2 | 67% | 67% | 1_861del |
23 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_130839.4 | 67% | 67% | 1_861del |
24 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | XM_017022547.2 | 67% | 67% | 1_861del |
25 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | XM_017022548.2 | 67% | 67% | 1_861del |
26 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | XM_017022550.2 | 67% | 67% | 1_861del |
27 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_000462.5 | 66.8% | 66.8% | 1_870del |
28 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | XM_011521995.3 | 66.8% | 66.8% | 1_870del |
29 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | XM_024450043.1 | 66.8% | 66.8% | 1_870del |
30 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354547.2 | 62.5% | 62.5% | 1_801del;2063_2064ins156 |
31 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354548.2 | 62.5% | 62.5% | 1_801del;2063_2064ins156 |
32 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354549.2 | 62.2% | 62.2% | 1_801del;1899_1900ins165 |
33 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NM_001354545.2 | 61.1% | 61.1% | 1_861del;2123_2124ins156 |
34 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | XM_017022556.2 | 60.9% | 60.9% | 1_870del;2132_2133ins156 |
35 | human | 7337 | UBE3A | ubiquitin protein ligase E3A | NR_148916.2 | 20.4% | 1_1377del;2123_2124insGCTA;3129_8540del | |
36 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | XM_006540803.3 | 68.1% | 70.7% | (many diffs) |
37 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | NM_001033962.1 | 64.9% | 67.4% | (many diffs) |
38 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | XM_011250847.2 | 64.9% | 67.4% | (many diffs) |
39 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | XM_006540800.3 | 64.2% | 66.7% | (many diffs) |
40 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | XM_006540801.3 | 64.2% | 66.7% | (many diffs) |
41 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | NM_011668.2 | 63.4% | 65.8% | (many diffs) |
42 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | XM_006540799.3 | 63.4% | 65.8% | (many diffs) |
43 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | XM_017322125.1 | 63.4% | 65.8% | (many diffs) |
44 | mouse | 22215 | Ube3a | ubiquitin protein ligase E3A | NM_173010.3 | 55.1% | 57.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1821
- ORF length:
- 1755
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga gaatagaaat ctccacagtc ctgaatatct ggaaatggct ttgccattat 121 tttgcaaagc gatgagcaag ctaccccttg cagcccaagg aaaactgatc agactgtggt 181 ctaaatacaa tgcagaccag attcggagaa tgatggagac atttcagcaa cttattactt 241 ataaagtcat aagcaatgaa tttaacagtc gaaatctagt gaatgatgat gatgccattg 301 ttgctgcttc gaagtgcttg aaaatggttt actatgcaaa tgtagtggga ggggaagtgg 361 acacaaatca caatgaagaa gatgatgaag agcccatccc tgagtccagc gagctgacac 421 ttcaggaact tttgggagaa gaaagaagaa acaagaaagg tcctcgagtg gaccccctgg 481 aaactgaact tggtgttaaa accctggatt gtcgaaaacc acttatccct tttgaagagt 541 ttattaatga accactgaat gaggttctag aaatggataa agattatact tttttcaaag 601 tagaaacaga gaacaaattc tcttttatga catgtccctt tatattgaat gctgtcacaa 661 agaatttggg attatattat gacaatagaa ttcgcatgta cagtgaacga agaatcactg 721 ttctctacag cttagttcaa ggacagcagt tgaatccata tttgagactc aaagttagac 781 gtgaccatat catagatgat gcacttgtcc ggctagagat gatcgctatg gaaaatcctg 841 cagacttgaa gaagcagttg tatgtggaat ttgaaggaga acaaggagtt gatgagggag 901 gtgtttccaa agaatttttt cagctggttg tggaggaaat cttcaatcca gatattggta 961 tgttcacata cgatgaatct acaaaattgt tttggtttaa tccatcttct tttgaaactg 1021 agggtcagtt tactctgatt ggcatagtac tgggtctggc tatttacaat aactgtatac 1081 tggatgtaca ttttcccatg gttgtctaca ggaagctaat ggggaaaaaa ggaacttttc 1141 gtgacttggg agactctcac ccagttctat atcagagttt aaaagattta ttggagtatg 1201 aagggaatgt ggaagatgac atgatgatca ctttccagat atcacagaca gatctttttg 1261 gtaacccaat gatgtatgat ctaaaggaaa atggtgataa aattccaatt acaaatgaaa 1321 acaggaagga atttgtcaat ctttattctg actacattct caataaatca gtagaaaaac 1381 agttcaaggc ttttcggaga ggttttcata tggtgaccaa tgaatctccc ttaaagtact 1441 tattcagacc agaagaaatt gaattgctta tatgtggaag ccggaatcta gatttccaag 1501 cactagaaga aactacagaa tatgacggtg gctataccag ggactctgtt ctgattaggg 1561 agttctggga aatcgttcat tcatttacag atgaacagaa aagactcttc ttgcagttta 1621 caacgggcac agacagagca cctgtgggag gactaggaaa attaaagatg attatagcca 1681 aaaatggccc agacacagaa aggttaccta catctcatac ttgctttaat gtgcttttac 1741 ttccggaata ctcaagcaaa gaaaaactta aagagagatt gttgaaggcc atcacgtatg 1801 ccaaaggatt tggcatgctg tacccaactt tcttgtacaa agtggttggt aagcctatcc 1861 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 1921 ttaagtcgac aatcaacctc tggatta