Construct: ORF ccsbBroad304_11287

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010579.1_s304c1, BRDN0000408412
Derived from:
ccsbBroadEn_11287
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPFF (8620)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11287
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8620 NPFF neuropeptide FF-amide pepti... NM_001320296.2 100% 100%
2 human 8620 NPFF neuropeptide FF-amide pepti... NM_003717.4 75.3% 65.3% (many diffs)
3 human 114108587 ATF7-NPFF ATF7-NPFF readthrough NR_159377.1 14.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
417
ORF length:
348
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggttccgcag cctcctacca cttgcccctg gaagccagtc ccttcccctt
121gtgacttacg tgtccagggt atttgcccat cttccttccc tgataccccc ttggcacagg
181aggaagacag cgaacccctc ccaccacagg atgcccagac ctctgggtca ctgttgcact
241acctgctcca ggcaatggag agacctggcc ggagccaagc cttcctgttt cagccccaga
301ggtttggcag aaatacccag ggatcctgga ggaatgaatg gctgagtccc cgggctggag
361aggggctgaa ttcccagttc tggagcctgg ctgcccctca acgctttggg aagaagttgc
421caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
481ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
541tta

Download FASTA (ORF) (Full)