Construct: ORF ccsbBroad304_11314

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017653.1_s304c1, BRDN0000403100
Derived from:
ccsbBroadEn_11314
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PER3 (8863)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11314
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8863 PER3 period circadian regulator 3 NM_001289863.2 31.9% 31.9% 591_593delAGC;1138_3552del
2 human 8863 PER3 period circadian regulator 3 NM_001289861.1 31.7% 31.7% 591_593delAGC;1138_3573del
3 human 8863 PER3 period circadian regulator 3 NM_016831.3 31.4% 31.4% 1135_3603del
4 human 8863 PER3 period circadian regulator 3 XM_024450590.1 31.4% 31.4% 1135_3603del
5 human 8863 PER3 period circadian regulator 3 XM_017002726.2 31.4% 31.4% 1135_3606del
6 human 8863 PER3 period circadian regulator 3 XM_024450588.1 31.4% 31.4% 591_593delAGC;1138_3606del
7 human 8863 PER3 period circadian regulator 3 XM_005263524.4 31.4% 31.4% 591_593delAGC;1138_3609del
8 human 8863 PER3 period circadian regulator 3 XM_024450587.1 31.4% 31.4% 591_593delAGC;1138_3609del
9 human 8863 PER3 period circadian regulator 3 XM_017002724.2 31.2% 31.2% 1135_3624del
10 human 8863 PER3 period circadian regulator 3 XM_017002723.2 31.2% 31.2% 1135_3627del
11 human 8863 PER3 period circadian regulator 3 XM_024450586.1 31.2% 31.2% 591_593delAGC;1138_3627del
12 human 8863 PER3 period circadian regulator 3 NM_001289862.1 31.2% 31.2% 591_593delAGC;1138_3630del
13 human 8863 PER3 period circadian regulator 3 XM_024450585.1 31.2% 31.2% 591_593delAGC;1138_3630del
14 human 8863 PER3 period circadian regulator 3 XM_017002727.1 26.6% 26.6% 0_1ins168;423_425delAGC;970_3462del
15 human 8863 PER3 period circadian regulator 3 XM_017002732.1 21.9% 20.9% (many diffs)
16 human 8863 PER3 period circadian regulator 3 XM_017002731.2 21.7% 20.7% (many diffs)
17 human 8863 PER3 period circadian regulator 3 XM_017002730.2 21.6% 20.6% (many diffs)
18 human 8863 PER3 period circadian regulator 3 XM_017002728.1 21.6% 20.6% (many diffs)
19 human 8863 PER3 period circadian regulator 3 XM_017002729.1 21.3% 20.5% 0_1ins244;30_31ins116;775_3267del
20 human 8863 PER3 period circadian regulator 3 XM_024450612.1 16.8% 16.8% 0_1ins525;66_68delAGC;613_3081del
21 human 8863 PER3 period circadian regulator 3 XM_024450611.1 16.8% 16.8% 0_1ins525;66_68delAGC;613_3084del
22 human 8863 PER3 period circadian regulator 3 XM_017002735.2 16.7% 16.7% 0_1ins525;66_68delAGC;613_3102del
23 human 8863 PER3 period circadian regulator 3 XM_017002733.2 16.7% 16.7% 0_1ins525;66_68delAGC;613_3105del
24 human 8863 PER3 period circadian regulator 3 XM_017002734.1 16.7% 16.7% 0_1ins525;66_68delAGC;613_3105del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1200
ORF length:
1134
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ccgcggggaa gctcctggcc ccgggagacg gggggctaag gacgaggccc
121tgggcgaaga atcgggggag cggtggagcc ccgagttcca tctgcagagg aaattggcgg
181acagcagcca cagtgaacag caagatcgaa acagagtttc tgaagaactt atcatggttg
241tccaagaaat gaaaaaatac ttcccctcgg agagacgcaa taaaccaagc actctagatg
301ccctcaacta tgctctccgc tgtgtccaca gcgttcaagc aaacagtgag tttttccaga
361ttctcagtca gaatggagca cctcaggcag atgtgagcat gtacagtctt gaggagctgg
421ccactatcgc ttcagaacac acttccaaaa acacagatac ctttgtggca gtattttcat
481ttctgtctgg aaggttagtg cacatttctg aacaggctgc tttgatcctg aatcgtaaga
541aagatgtcct ggcgtcttct cactttgttg acctgcttgc acctcaagac atgagggtat
601tctacgcgca cactgccaga gctcagcttc ctttctggaa caactggacc caaagagctg
661cacggtatga atgtgctccg gtgaaacctt ttttctgcag gatccgtgga ggtgaagaca
721gaaagcaaga gaagtgtcac tccccattcc ggatcatccc ctatctgatt catgtacatc
781accctgccca gccagaattg gaatcggaac cttgctgtct cactgtggtt gaaaagattc
841actctggtta tgaagctcct cggatcccag tgaataaaag aatcttcacc accacacaca
901ccccagggtg tgtttttctt gaagtagatg aaaaagcagt gcctttgctg ggttacctac
961ctcaggacct gattggaaca tcgatcctaa gctacctgca ccctgaagat cgttctctga
1021tggttgccat acaccaaaaa gttttgaagt atgcagggca tcctcccttt gaacattctc
1081ccattcgatt ttgtactcaa aacggagact acatcatact ggattccagt tggtccagct
1141ttgtgaatcc ctggagccgg aagatttctt tcatcattgg tcggcataaa gttcgaacgt
1201acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1261attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1321ggatta

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