Construct: ORF ccsbBroad304_11399

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001303.1_s304c1, BRDN0000400789
Derived from:
ccsbBroadEn_11399
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WSCD2 (9671)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11399
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9671 WSCD2 WSC domain containing 2 XM_017020249.1 48.4% 48.4% 1_690del;1043_1044ins60
2 human 9671 WSCD2 WSC domain containing 2 XM_017020250.2 48.4% 48.4% 1_690del;1043_1044ins60
3 human 9671 WSCD2 WSC domain containing 2 XM_017020251.2 48.4% 48.4% 1_690del;1043_1044ins60
4 human 9671 WSCD2 WSC domain containing 2 XM_017020252.1 48.4% 48.4% 1_690del;1043_1044ins60
5 human 9671 WSCD2 WSC domain containing 2 NM_001304447.2 40.1% 40.1% 1_990del;1343_1344ins60
6 human 9671 WSCD2 WSC domain containing 2 NM_014653.4 40.1% 40.1% 1_990del;1343_1344ins60
7 human 9671 WSCD2 WSC domain containing 2 XM_017020243.1 40.1% 40.1% 1_990del;1343_1344ins60
8 human 9671 WSCD2 WSC domain containing 2 XM_017020244.1 40.1% 40.1% 1_990del;1343_1344ins60
9 human 9671 WSCD2 WSC domain containing 2 XM_017020245.1 40.1% 40.1% 1_990del;1343_1344ins60
10 human 9671 WSCD2 WSC domain containing 2 XM_017020246.2 40.1% 40.1% 1_990del;1343_1344ins60
11 human 9671 WSCD2 WSC domain containing 2 XM_017020247.1 40.1% 40.1% 1_990del;1343_1344ins60
12 human 9671 WSCD2 WSC domain containing 2 XM_017020248.1 40.1% 40.1% 1_990del;1343_1344ins60
13 human 9671 WSCD2 WSC domain containing 2 XR_001748926.2 17.5% 1_1601del;1955_2172del;2585_4363del
14 human 9671 WSCD2 WSC domain containing 2 XR_001748925.2 17.3% 1_1653del;2007_2224del;2637_4415del
15 human 9671 WSCD2 WSC domain containing 2 XR_001748924.2 16.4% 1_1901del;2255_2472del;2885_4663del
16 human 9671 WSCD2 WSC domain containing 2 XR_944841.2 15.1% 1_2282del;2636_2853del;3266_5044del
17 mouse 320916 Wscd2 WSC domain containing 2 NM_177292.3 34.8% 37.3% (many diffs)
18 mouse 320916 Wscd2 WSC domain containing 2 XM_017320928.1 34.8% 37.3% (many diffs)
19 mouse 320916 Wscd2 WSC domain containing 2 XR_001784707.1 11.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
831
ORF length:
765
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cagaaggttc ctgccaggca agtccaagca gctcattgct ttggccagct
121tcccaggtgc tggcaacacg tgggctcgcc acctcattga attggccaca ggcttctaca
181ctggcagcta ctacttcgat ggctccctct acaacaaagg gtttaaaggt gagcgggacc
241actggcgcag cggacggacc atctgcatca agacgcacga aagcggccag aaagagatcg
301aggccttcga cgccgccatc ctgctcatcc gcaaccccta caaagccctc atggctgagt
361tcaaccgcaa gtacggcggc cacataggct ttgctgcgca tgcccactgg aagggcaaag
421gagccgtacc aggatctttg caaatcttat ttcgctcgat ttgcacagca tctgtaggag
481agtggccaga gttcgtgagg aactatgccc cgtggtgggc cactcacaca ctggactggc
541tcaagtttgg caagaaggtg ctggtggtgc actttgagga cctgaagcag gacctctttg
601tccagctggg ccggatggtc agcctgctgg gcgtggctgt cagggaggac cggctgctct
661gtgtggagag ccagaaggat ggcaacttca agcgctcagg gctccggaag ctcgagtatg
721acccctatac tgcggacatg cagaagacca tctctgccta catcaagatg gtggatgcag
781ccctcaaagg gcggaaccta acgggtgtcc ccgatgacta ctacccaaga tgcccaactt
841tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
901agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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