Transcript: Human XR_944841.2

PREDICTED: Homo sapiens WSC domain containing 2 (WSCD2), transcript variant X11, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
WSCD2 (9671)
Length:
5044
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_944841.2
NBCI Gene record:
WSCD2 (9671)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_944841.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418606 GAAGTGCTGGCACCGATGTTT pLKO_005 3740 3UTR 100% 5.625 4.500 N WSCD2 n/a
2 TRCN0000158682 GCATCAATCTTACAAAGTGTT pLKO.1 4419 3UTR 100% 4.950 3.960 N WSCD2 n/a
3 TRCN0000434381 GGACTCCTAGTTACTTCATTG pLKO_005 2230 3UTR 100% 10.800 7.560 N WSCD2 n/a
4 TRCN0000414252 CTGCATCAAGACGCACGAAAG pLKO_005 2480 3UTR 100% 6.000 4.200 N WSCD2 n/a
5 TRCN0000158615 CCACCTTCTGTTCTAAAGAAA pLKO.1 3769 3UTR 100% 5.625 3.938 N WSCD2 n/a
6 TRCN0000164402 CAGGTATGGAAGTGCAGTGTT pLKO.1 1970 3UTR 100% 4.950 3.465 N WSCD2 n/a
7 TRCN0000163306 GCCTACATCAAGATGGTGGAT pLKO.1 3191 3UTR 100% 2.640 1.848 N WSCD2 n/a
8 TRCN0000413809 GTCCCTTCTGGGCTGAGATTT pLKO_005 3692 3UTR 100% 13.200 7.920 N WSCD2 n/a
9 TRCN0000158652 CCTTCTGTTCTAAAGAAAGAT pLKO.1 3772 3UTR 100% 5.625 3.375 N WSCD2 n/a
10 TRCN0000164132 CCAGAAGGATGGCAACTTCAA pLKO.1 3106 3UTR 100% 4.950 2.970 N WSCD2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_944841.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11399 pDONR223 100% 15.1% None 1_2282del;2636_2853del;3266_5044del n/a
2 ccsbBroad304_11399 pLX_304 0% 15.1% V5 1_2282del;2636_2853del;3266_5044del n/a
3 TRCN0000492263 GAAATGCAGGTCCGAAGGCAGATC pLX_317 45.3% 15.1% V5 1_2282del;2636_2853del;3266_5044del n/a
Download CSV