Construct: ORF ccsbBroad304_11405

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001928.1_s304c1, BRDN0000406872
Derived from:
ccsbBroadEn_11405
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE3C (9690)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11405
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9690 UBE3C ubiquitin protein ligase E3C NM_014671.3 59.1% 58.8% (many diffs)
2 human 9690 UBE3C ubiquitin protein ligase E3C XM_017012818.1 57.2% 56.8% (many diffs)
3 human 9690 UBE3C ubiquitin protein ligase E3C XM_005249564.4 56.8% 56.5% (many diffs)
4 human 9690 UBE3C ubiquitin protein ligase E3C XR_927552.3 38% (many diffs)
5 mouse 100763 Ube3c ubiquitin protein ligase E3C NM_133907.3 51.4% 53.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2013
ORF length:
1947
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt cagcttcgaa ggcgacttca agacgcggcc caaggtgtcc cttggcggcg
121cgagcaggaa ggaggaaaag gcttctcttt tacatcgtac tcaggaagaa agaagaaaga
181gagaggaaga aaggcgaagg ttgaaaaatg caataattat ccagtcattt attcgaggct
241atagagacag aaaacagcaa tattccatcc aaagaagtgc atttgatcgc tgtgctacct
301tgtcacagtc cgggggcgct tttcccattg ctaatggccc caaccttacc cttttggtaa
361ggcagcttct gtttttttac aaacaaaatg aagactcaaa acgtttgata tggctgtatc
421agaacttaat taaacacagc tctctgtttg tcaagcagtt ggatggatct gagagactta
481catgcttatt tcagataaaa agattgatga gcctctgttg caggttgctg caaaactgta
541atgatgacag tttgaatgtt gcacttccaa tgagaatgct tgaagtattt tcgtctgaga
601atacttactt gcctgtttta caagatgcta gctatgtggt gtcagtgatt gaacaaattt
661tgcactacat gattcacaat gggtattata ggtctctata tttgttgatt aacagcaagc
721ttccatcaag tattgaatat tctgatttat ctcgagttcc tatagcaaaa attttgctag
781agaatgttct aaaaccattg cactttactt acaactcctg tccggaaggt gcgaggcaac
841aagtttttac agccttcaca gaggagtttc tggcagcacc ttttacagat cagatttttc
901atttcatcat tccggcgctt gcagatgcgc agaccgtttt cccttacgag ccctttctga
961atgcactgtt gttaatagag agtagatgtt caagaaagag tggtggagca ccctggcttt
1021tctatttcgt tttaactgtt ggcgaaaatt atttgggggc cctctctgag gaagggctgc
1081tggtgtattt gcgggtgctg cagaccttcc tctctcagtt accagtctct cctgccagcg
1141cgagctgtca cgactcagcc agtgactctg aggaggagag tgaagaagcc gacaagccct
1201caagcccgga ggatggcaga ctgtcagtat catacataac agaggaatgc ctgaagaagc
1261tggacacaaa gcagcagacc aacaccctgc tcaacctggt gtggagggac tctgcgagcg
1321aggaggtctt caccaccatg gcctccgtct gccacacgct gatggtgcag caccgcatga
1381tggtacccaa agtcaggctt ctctacagtt tagcctttaa tgccaggttt ctgagacatc
1441tttggtttct aatatcttcc atgtcaacac ggatgatcac agggtctatg gtaccgttgc
1501ttcaggtgat atccaggggt tctcctatgt cttttgaaga ttctagtcga atcatcccac
1561tcttttacct ttttagctcc ttgtttagtc attcactaat ttccatacat gataacgaat
1621tcttcggtga tcccatagaa gttgtaggtc aaagacaatc atcaatgatg ccttttactt
1681tagaagagct gataatgttg tctcgatgcc ttcgagatgc atgcctgggg atcatcaagt
1741tggcttatcc agaaaccaag ccagaagttc gagaagaata tattacagca tttcagagta
1801ttggagttac tactagctct gaaatgcaac aatgcataca gatggaacag aaaagatgga
1861ttcagttatt taaggttatc accaatctag tgaaaatgtt gaagtccaga gacacgagga
1921gaaatttttg tcctccaaac cactggctgt cagaacaaga agatattaaa gcagataagg
1981tgttattgaa agatcttttt aatatttatc attacccaac tttcttgtac aaagtggttg
2041gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
2101accggtggcg cgttaagtcg acaatcaacc tctggatta

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