Transcript: Mouse NM_133907.3

Mus musculus ubiquitin protein ligase E3C (Ube3c), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Ube3c (100763)
Length:
5033
CDS:
274..3525

Additional Resources:

NCBI RefSeq record:
NM_133907.3
NBCI Gene record:
Ube3c (100763)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_133907.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040497 GCCGATCATCCTGTCATTAAA pLKO.1 3235 CDS 100% 15.000 21.000 N Ube3c n/a
2 TRCN0000301275 GCCGATCATCCTGTCATTAAA pLKO_005 3235 CDS 100% 15.000 21.000 N Ube3c n/a
3 TRCN0000040493 GCTCTCTGTTTGTCAAGCAAT pLKO.1 647 CDS 100% 4.950 6.930 N Ube3c n/a
4 TRCN0000301278 GCTCTCTGTTTGTCAAGCAAT pLKO_005 647 CDS 100% 4.950 6.930 N Ube3c n/a
5 TRCN0000040496 GCAAGGCATTACTACTTCCTA pLKO.1 2716 CDS 100% 3.000 4.200 N Ube3c n/a
6 TRCN0000301279 GCAAGGCATTACTACTTCCTA pLKO_005 2716 CDS 100% 3.000 4.200 N Ube3c n/a
7 TRCN0000010783 GTCAGGCTTCTCTACAGTTTA pLKO.1 1600 CDS 100% 13.200 9.240 N UBE3C n/a
8 TRCN0000352642 GTCAGGCTTCTCTACAGTTTA pLKO_005 1600 CDS 100% 13.200 9.240 N UBE3C n/a
9 TRCN0000040494 GCTGATAAGCAAGAAGTTCAA pLKO.1 2395 CDS 100% 4.950 3.465 N Ube3c n/a
10 TRCN0000301276 GCTGATAAGCAAGAAGTTCAA pLKO_005 2395 CDS 100% 4.950 3.465 N Ube3c n/a
11 TRCN0000040495 GCACTTCCAATGCGAATGCTT pLKO.1 769 CDS 100% 3.000 2.100 N Ube3c n/a
12 TRCN0000301202 GCACTTCCAATGCGAATGCTT pLKO_005 769 CDS 100% 3.000 2.100 N Ube3c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133907.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11405 pDONR223 100% 51.4% 53.2% None (many diffs) n/a
2 ccsbBroad304_11405 pLX_304 0% 51.4% 53.2% V5 (many diffs) n/a
3 TRCN0000477446 TGTCGGTGAGTGCAAGTAGTTATA pLX_317 22.6% 51.4% 53.2% V5 (many diffs) n/a
4 ccsbBroadEn_15674 pDONR223 0% 31.8% 32.1% None (many diffs) n/a
5 ccsbBroad304_15674 pLX_304 0% 31.8% 32.1% V5 (many diffs) n/a
6 TRCN0000472548 CTCAGAAGTTACCGATGAATAAAA pLX_317 43.7% 31.8% 32.1% V5 (many diffs) n/a
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