Construct: ORF ccsbBroad304_11472

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005777.1_s304c1, BRDN0000407981
Derived from:
ccsbBroadEn_11472
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD96 (10225)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11472
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10225 CD96 CD96 molecule NM_001318889.2 99.9% 100% 816T>C
2 human 10225 CD96 CD96 molecule XM_005247063.3 94.6% 94.2% (many diffs)
3 human 10225 CD96 CD96 molecule XM_006713470.3 69.9% 68.5% (many diffs)
4 human 10225 CD96 CD96 molecule NM_005816.5 69.8% 68.4% (many diffs)
5 human 10225 CD96 CD96 molecule XM_006713469.3 68% 66.6% (many diffs)
6 human 10225 CD96 CD96 molecule NM_198196.3 67.9% 66.5% (many diffs)
7 human 10225 CD96 CD96 molecule XM_017005521.1 57.1% 55.9% (many diffs)
8 human 10225 CD96 CD96 molecule XM_017005522.1 54.4% 53.1% (many diffs)
9 human 10225 CD96 CD96 molecule NR_134917.2 52.2% (many diffs)
10 human 10225 CD96 CD96 molecule XR_241462.1 49.4% (many diffs)
11 human 10225 CD96 CD96 molecule XR_924090.1 47% (many diffs)
12 human 10225 CD96 CD96 molecule XR_001739977.1 28.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1272
ORF length:
1206
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gaaaaaatgg aaatactgtg ctgtctatta catcatccag atacattttg
121tcaagggagt ttgggaaaaa acagtcaaca cagaagaaaa tgtttatgct acacttggct
181ctgatgtcaa cctgacctgc caaacacaga cagtaggctt cttcgtgcag atgcaatggt
241ccaaggtcac caataagata gacctgattg ctgtctatca tccccaatac ggcttctact
301gtgcctatgg gagaccctgt gagtcacttg tgactttcac agaaactcct gagaatgggt
361caaaatggac tctgcactta aggaatatgt cttgttcagt cagtggaagg tacgagtgta
421tgcttgttct gtatccagag ggcattcaga ctaaaatcta caaccttctc attcagacac
481acgttacagc agatgaatgg aacagcaacc atacgataga aatagagata aatcagactc
541tggaaatacc atgctttcaa aatagctcct caaaaatttc atctgagttc acctatgcat
601ggtcggtgga ggataatgga actcaggaaa cacttatctc ccaaaatcac ctcatcagca
661attccacatt acttaaagat agagtcaagc ttggtacaga ctacagactc cacctctctc
721cagtccaaat cttcgatgat gggcggaagt tctcttgcca cattagagtc ggtcctaaca
781aaatcttgag gagctccacc acagtcaagg tttttgctaa accagaaatc cctgtgattg
841tggaaaataa ctccacggat gtcttggtag agagaagatt cacctgctta ctaaagaatg
901tatttcccaa agcaaatatc acatggttta tagatggaag ttttcttcat gatgaaaaag
961aaggaatata tattactaat gaagagagaa aaggcaaaga tggatttttg gaactgaagt
1021ctgttttaac aagggtacat agtaataaac cagcccaatc agacaacttg accatttggt
1081gtatggctct gtctccagtc ccaggaaata aagtgtggaa catctcatca gaaaagatca
1141cttttctctt aggttctgaa atttcctcaa cagaccctcc actgagtgtt acagaatcta
1201cccttgacac ccaaccttct ccagccagca gtgtatctcc tgcaagtaag aatgttttca
1261cactgagcta ttgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1321tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1381caatcaacct ctggatta

Download FASTA (ORF) (Full)

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