Construct: ORF ccsbBroad304_11505

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011852.1_s304c1, BRDN0000461717
Derived from:
ccsbBroadEn_11505
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIBF1 (10464)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11505
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10464 PIBF1 progesterone immunomodulato... NM_006346.4 91.2% 90.3% (many diffs)
2 human 10464 PIBF1 progesterone immunomodulato... XM_024449314.1 90.8% 87.6% (many diffs)
3 human 10464 PIBF1 progesterone immunomodulato... NM_001349655.2 87.9% 87% (many diffs)
4 human 10464 PIBF1 progesterone immunomodulato... XM_011534882.3 87.2% 84.2% (many diffs)
5 human 10464 PIBF1 progesterone immunomodulato... XM_011534884.3 83.9% 83.7% (many diffs)
6 human 10464 PIBF1 progesterone immunomodulato... XR_001749459.2 81.6% (many diffs)
7 human 10464 PIBF1 progesterone immunomodulato... XR_001749457.2 76.6% (many diffs)
8 human 10464 PIBF1 progesterone immunomodulato... XM_017020351.2 75.8% 75.5% (many diffs)
9 human 10464 PIBF1 progesterone immunomodulato... XM_017020350.2 75% 74.1% (many diffs)
10 human 10464 PIBF1 progesterone immunomodulato... XR_001749458.2 74.7% (many diffs)
11 human 10464 PIBF1 progesterone immunomodulato... XR_001749456.2 74.2% (many diffs)
12 human 10464 PIBF1 progesterone immunomodulato... XR_002957449.1 73.6% (many diffs)
13 human 10464 PIBF1 progesterone immunomodulato... XM_011534885.3 72.2% 71.3% (many diffs)
14 human 10464 PIBF1 progesterone immunomodulato... XR_001749460.2 69% (many diffs)
15 human 10464 PIBF1 progesterone immunomodulato... NR_146206.2 68.1% (many diffs)
16 human 10464 PIBF1 progesterone immunomodulato... XR_941461.3 66.8% (many diffs)
17 human 10464 PIBF1 progesterone immunomodulato... NR_146205.2 66.8% (many diffs)
18 human 10464 PIBF1 progesterone immunomodulato... XM_011534886.3 60.7% 60.5% (many diffs)
19 human 10464 PIBF1 progesterone immunomodulato... XM_017020352.2 40.3% 36.1% (many diffs)
20 human 10464 PIBF1 progesterone immunomodulato... XM_017020354.2 38.4% 37.5% (many diffs)
21 mouse 52023 Pibf1 progesterone immunomodulato... NM_029320.3 79.8% 82% (many diffs)
22 mouse 52023 Pibf1 progesterone immunomodulato... XM_006519251.3 71.2% 72.4% (many diffs)
23 mouse 52023 Pibf1 progesterone immunomodulato... XR_383193.3 67.5% (many diffs)
24 mouse 52023 Pibf1 progesterone immunomodulato... XM_006519253.3 66% 67.8% (many diffs)
25 mouse 52023 Pibf1 progesterone immunomodulato... XM_006519254.3 65.6% 67.3% (many diffs)
26 mouse 52023 Pibf1 progesterone immunomodulato... XM_006519255.3 65.1% 62.8% (many diffs)
27 mouse 52023 Pibf1 progesterone immunomodulato... XR_001781130.1 62.3% (many diffs)
28 mouse 52023 Pibf1 progesterone immunomodulato... XM_006519256.3 55.7% 55.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2163
ORF length:
2094
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtctcgaaaa atttcaaagg agtcaaaaaa agtgaacatc tctagttctc
121tggaatctga agatattagt ttagaaacaa cagttcctac ggatgatatt tcctcatcag
181aagagcgaga gggcaaagtc agaatcacca ggcagctaat tgaacgaaaa gaactacttc
241ataatattca gttactaaaa attgagctat cccagaaaac tatgatgatc gacaatttga
301aagtggatta tcttacaaag attgaagaat tggaggagaa acttaatgat gcacttcacc
361agaagcagct actaacattg agattagaca accaattggc ttttcaacag aaagatgcca
421gcaaatatca agaattaatg aaacaagaaa tggaaaccat tttgttgaga cagaaacaac
481tagaagagac aaatcttcag ctaagagaaa aagctggaga tgttcgtcga aacctgcgtg
541actttgagtt gacagaagag caatatgtta aattaaaagc ttttcctgaa gatcagcttt
601ctattcctga atatgtatct gttcgcttct atgagctagt gaatccatta agaaaggaaa
661tctgtgaact acaagtgaaa aagaatatcc tagcagaaga attaagtaca aacaaaaacc
721aactgaagca gctgacagag acatatgagg aagatcgaaa aaactactct gaagttcaaa
781ttagatgtca acgtttggcc ttagaattag cagacacaaa acagttaatt cagcaaggtg
841actaccgtca agagaactat gataaagtca agagtgaacg tgatgcactt gaacaggaag
901taattgagct taggagaaaa catgaaatac ttgaagcctc tcacatgatt caaacaaaag
961aacgaagtga attatcaaaa gaggtagtca ccttagagca aactgttact ttactgcaaa
1021aggataaaga atatcttaat cgccaaaaca tggagcttag tgttcgctgt gctcatgaag
1081aggatcgcct tgaaagactt caagctcaac tggaagaaag caaaaaggct agagaagaga
1141tgtatgaaaa atatgtagca tccagagacc attataaaac agaatatgaa aataaactac
1201atgatgaact agaacaaatc agattgaaaa ccaaccaaga aattgatcaa cttcgaaatg
1261cctctaggga aatgtatgaa cgagaaaaca gaaatctccg agaagcaagg gataatgctg
1321tggctgaaaa ggaacgagca gtgatggctg aaaaggatgc tttagaaaaa cacgatcagc
1381tcttagacag gtacagagaa ctacaactta gtacagaaag caaagtaaca gaatttctcc
1441atcaaagtaa attaaaatct tttgaaagtg agcgtgttca acttctgcaa gaggaaacag
1501caagaaatct cacacagtgt caattggaat gtgaaaaata tcaggaaaaa ttggaggttt
1561taaccaaaga attttatagt ctccaagcct cttctgaaaa acgcattact gaacttcaag
1621cacagaactc agagcatcaa gcaaggctag acatttatga gaaactggaa aaagagcttg
1681atgaaataat aatgcaaact gcagaaattg aaaatgaaga tgaggctgaa agggttcttt
1741tttcctacgg ctatggtgct aatgttccca caacagccaa aagacgacta aagcaaagtg
1801ttcacttggc aagaagagtg cttcaattag aaaaacaaaa ctcgctgatt ttaaaagatc
1861tggaacatcg aaaggaccaa gtaacacagc tttcacaaga gcttgacaga gccaattcgc
1921tattaaacca gactcaacag ccttacaggt atctcgttga atcagtgcgt cagagagatt
1981ctaagattga ttcactgacg gaatctattg cacaacttga gaaagatgtc agcaacttaa
2041ataaagaaaa gtcagcttta ctacagacga agaatcaaat ggcattagat ttagaacaac
2101ttctaaatca tcgtgaggta tttttcctat tttgtcataa ttgtaatcat tttaggcttt
2161ttttgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
2221tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2281tctggatta

Download FASTA (ORF) (Full)

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