Transcript: Mouse XM_006519255.3

PREDICTED: Mus musculus progesterone immunomodulatory binding factor 1 (Pibf1), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pibf1 (52023)
Length:
2045
CDS:
379..1950

Additional Resources:

NCBI RefSeq record:
XM_006519255.3
NBCI Gene record:
Pibf1 (52023)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006519255.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000249178 TTAGACAATCAGTTGACTATT pLKO_005 694 CDS 100% 13.200 18.480 N Pibf1 n/a
2 TRCN0000183530 GAACTTCTAATTCGATGTCAA pLKO.1 1081 CDS 100% 4.950 3.960 N Pibf1 n/a
3 TRCN0000249176 CACGTCCAGAGACCATTATAA pLKO_005 1467 CDS 100% 15.000 10.500 N Pibf1 n/a
4 TRCN0000249175 GAAGAACTGAGTACAAGTAAA pLKO_005 1006 CDS 100% 13.200 9.240 N Pibf1 n/a
5 TRCN0000249179 TGAGCTCGTGAACCCATTAAG pLKO_005 942 CDS 100% 13.200 9.240 N Pibf1 n/a
6 TRCN0000179777 GCTCAAGCTAAGGAAAGGAAT pLKO.1 1258 CDS 100% 4.950 3.465 N Pibf1 n/a
7 TRCN0000216558 GAGTCTGAAGATATTAGTTTG pLKO.1 433 CDS 100% 10.800 6.480 N Pibf1 n/a
8 TRCN0000179346 GCTGCTAACTTTGCGATTAGA pLKO.1 678 CDS 100% 5.625 3.375 N Pibf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006519255.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11505 pDONR223 100% 65.1% 62.8% None (many diffs) n/a
2 ccsbBroad304_11505 pLX_304 0% 65.1% 62.8% V5 (many diffs) n/a
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