Construct: ORF ccsbBroad304_11537
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008473.1_s304c1, BRDN0000401466
- Derived from:
- ccsbBroadEn_11537
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AVIL (10677)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11537
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10677 | AVIL | advillin | NM_006576.3 | 98.3% | 97.5% | (many diffs) |
| 2 | human | 10677 | AVIL | advillin | XM_017018710.2 | 98.3% | 97.5% | (many diffs) |
| 3 | human | 10677 | AVIL | advillin | XM_017018711.2 | 97.9% | 97.9% | 0_1ins48;541A>G |
| 4 | human | 10677 | AVIL | advillin | XM_017018712.2 | 97.9% | 97.9% | 0_1ins48;541A>G |
| 5 | human | 10677 | AVIL | advillin | XM_017018713.2 | 97.9% | 97.9% | 0_1ins48;541A>G |
| 6 | human | 10677 | AVIL | advillin | XM_024448800.1 | 97.9% | 97.9% | 0_1ins48;541A>G |
| 7 | human | 10677 | AVIL | advillin | XM_017018714.2 | 63.4% | 62.6% | (many diffs) |
| 8 | human | 10677 | AVIL | advillin | XM_017018715.2 | 61.8% | 61.8% | 0_1ins930 |
| 9 | mouse | 11567 | Avil | advillin | NM_009635.3 | 85.8% | 87.6% | (many diffs) |
| 10 | mouse | 11567 | Avil | advillin | XM_006513099.3 | 82.9% | 84.6% | (many diffs) |
| 11 | mouse | 11567 | Avil | advillin | XM_006513100.3 | 82.9% | 84.6% | (many diffs) |
| 12 | mouse | 11567 | Avil | advillin | XM_006513101.2 | 82.9% | 84.6% | (many diffs) |
| 13 | mouse | 11567 | Avil | advillin | XM_006513102.2 | 82.9% | 84.7% | (many diffs) |
| 14 | mouse | 11567 | Avil | advillin | XM_006513097.3 | 80.2% | 81.8% | (many diffs) |
| 15 | mouse | 11567 | Avil | advillin | XM_006513098.3 | 80.2% | 81.8% | (many diffs) |
| 16 | mouse | 11567 | Avil | advillin | XR_871691.2 | 45% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2505
- ORF length:
- 2436
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcttccacg gggcaccctg gctcctacaa aatatgggga gagaaaatgg 121 agctggcgct ggtgcctgtg agcgcccacg gcaacttcta tgagggggac tgctacgtca 181 tcctctcgac ccggagagtg gccagtctcc tatcccagga catccacttc tggatcggga 241 aggactcctc ccaggatgag caaagctgcg cagccatata taccacacag ctggacgact 301 acctgggagg cagccctgtg cagcaccgag aggtccagta ccatgagtca gacactttcc 361 gtggctactt caagcagggc atcatctaca agcagggggg tgtcgcctct gggatgaagc 421 acgtggagac caatacctac gacgtgaagc ggctgctaca tgtgaaaggg aaaagaaaca 481 tcagggctac cgaggtggaa atgagctggg acagtttcaa ccgaggtgat gtcttcttgc 541 tggaccttgg gaaagtcatc atccaatgga atggcccaga gagcaacagt ggggagcgcc 601 tgaaggctat gcttctggca aaggatattc gagacaggga gcgagggggc cgtgctgaaa 661 taggagtgat cgagggagac aaggaggcag ccagcccaga gctgatgaag gtccttcagg 721 acacccttgg ccgacgctcc attatcaagc ctacagtccc tgatgagatc atagatcaga 781 agcagaaatc aactatcatg ttgtatcata tctcagattc agctgggcag ctggcagtca 841 cagaggtagc aacaaggcct ctggtccagg acttactgaa ccatgatgac tgctacatcc 901 tggaccaaag tggaaccaaa atctacgtgt ggaaaggaaa aggagccaca aaggctgaaa 961 aacaggcagc catgtctaaa gcgctgggct tcatcaagat gaagagctac cccagcagca 1021 ccaatgtgga gaccgtcaac gatggtgctg agtcggccat gttcaagcag ctgttccaga 1081 agtggtcagt aaaggaccag accatgggcc tggggaaaac gttcagcatt ggtaaaattg 1141 ctaaagtttt ccaggataaa tttgatgtga ctctgctaca caccaagcca gaggtagctg 1201 cccaggaaag aatggtcgat gatggcaacg gaaaagttga ggtctggaga attgagaacc 1261 tggagctggt ccctgtggag tatcaatggt atggcttctt ttatggggga gactgttatc 1321 tggtcctcta cacatacgag gtaaatggga agccacatca catcttgtac atctggcagg 1381 gccgccacgc ctcacaggat gagctggcag cctcagcata ccaggcagtg gaggtggatc 1441 ggcagtttga tggggctgct gtgcaggttc gagtcaggat gggaacggag ccacgccact 1501 tcatggccat cttcaaaggg aagctagtta tctttgaggg tgggacttcc aggaagggaa 1561 atgccgagcc tgaccctcca gtaagactct tccaaattca tggaaatgac aaatctaaca 1621 ccaaagcagt ggaagttcca gcctttgcct cctccctaaa ctccaatgat gtctttctgc 1681 tgcgaactca ggcagagcac tacctgtggt atggcaaggg gtctagtggg gatgagcggg 1741 caatggctaa ggagctggcc agccttctct gtgatggcag cgagaacact gtggccgagg 1801 gccaggagcc agccgagttc tgggacctac tgggagggaa aactccctat gccaatgata 1861 aaagacttca gcaggaaatc ctagatgtcc agtctcgtct ctttgaatgt tccaataaga 1921 ccggccaatt cgttgtcact gagatcacag acttcaccca ggatgacctg aaccctactg 1981 acgtgatgct cctagatacc tgggaccagg tgttcttgtg gattggggct gaggccaatg 2041 ccacggagaa ggagagtgcc cttgccacag cacagcagta cctgcacact caccccagcg 2101 gccgagatcc cgacacacca atcctgatca ttaagcaggg gtttgagcct cccatcttca 2161 caggctggtt cctagcctgg gaccctaaca tttggagtgc aggaaaaaca tatgaacaat 2221 taaaagaaga gctgggagat gctgctgcta tcatgcgaat cactgctgac atgaagaatg 2281 caaccctctc cctgaattct aatgacagtg agccaaaata ttaccctata gcagttctgt 2341 tgaaaaacca gaatcaggag ctgcctgagg atgtaaaccc tgccaaaaag gagaattacc 2401 tctctgaaca ggactttgtg tctgtgtttg gcatcacaag agggcaattt gcagctctgc 2461 ctggctggaa acagctccaa atgaagaaag aaaaggggct tttcttgcca actttcttgt 2521 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 2581 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a