Construct: ORF ccsbBroad304_11609

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001712.1_s304c1, BRDN0000408960
Derived from:
ccsbBroadEn_11609
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR6 (11180)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11609
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11180 WDR6 WD repeat domain 6 NM_001320547.1 27% 27% 1_2343del
2 human 11180 WDR6 WD repeat domain 6 NM_001320546.2 26.3% 26.3% 1_2418del
3 human 11180 WDR6 WD repeat domain 6 NM_018031.6 25.7% 25.7% 1_2496del
4 mouse 83669 Wdr6 WD repeat domain 6 NM_031392.2 22.1% 22.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
933
ORF length:
867
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca cctttcgtcc caccggctag atgagtattg ggaccggcaa cgcaatcggc
121atcggatggt taaggtagac ccagagacca ggtacatgtc ccttgctgtg tgtgaacttg
181accagcccgg ccttggcccc cttgtggctg cagcctgtag tgatggggcc gtaaggctct
241ttcttttgca ggattctggg cggattctgc agctccttgc tgaaaccttc caccataagc
301gatgtgtcct caaggtccac tcctttacac acgaggcacc caaccagagg cggaggctcc
361tcctgtgcag cgcagctact gatggcagcc tggctttctg ggatctcacc accatgctag
421accatgactc cactgtcctg gagcctccag tggatcctgg gcttccctac cggcttggca
481ccccctccct gactctccag gcccacagct gtggtatcaa cagcctgcac accttgccca
541cccgtgaggg ccaccatctc gtggccagtg gcagtgaaga tggatccctc catgtcttcg
601tgcttgctgt ggagatgcta cagctagaag aggctgtggg agaggctggg ctggtacccc
661agctgcgtgt gctagaggaa tactctgtcc cctgtgcaca tgctgcccat gtgacaggcc
721tcaagatcct aagcccaagc atcatggtct cagcctccat tgatcaacgg ctgaccttct
781ggcgtctggg gcatggtgaa cccaccttca tgaatagcac tgtgttccat gtgcctgatg
841tggctgacat ggactgctgg cctgtgagcc ctgagtttgg ccaccgttgt gcccttgggg
901gtcaggggct tgaggtttac aactggtatg actgcccaac tttcttgtac aaagtggttg
961gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1021accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)