Transcript: Human NM_001320546.2

Homo sapiens WD repeat domain 6 (WDR6), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-03-22
Taxon:
Homo sapiens (human)
Gene:
WDR6 (11180)
Length:
4286
CDS:
334..3621

Additional Resources:

NCBI RefSeq record:
NM_001320546.2
NBCI Gene record:
WDR6 (11180)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001320546.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330489 GTGGGCATCTGCGGATGATAA pLKO_005 395 CDS 100% 13.200 18.480 N WDR6 n/a
2 TRCN0000330487 CCACCGGCTAGATGAGTATTG pLKO_005 2766 CDS 100% 10.800 15.120 N WDR6 n/a
3 TRCN0000330490 TAAAGCGTGTGGGCACCATTA pLKO_005 2375 CDS 100% 10.800 15.120 N WDR6 n/a
4 TRCN0000197381 CTTGAGGTTTACAACTGGTAT pLKO.1 3595 CDS 100% 4.950 6.930 N Wdr6 n/a
5 TRCN0000145277 GCTGCTAGAGGATAAACATTT pLKO.1 1404 CDS 100% 13.200 10.560 N WDR6 n/a
6 TRCN0000140691 GCAGAATATTGGGCACTGCTT pLKO.1 999 CDS 100% 2.640 2.112 N WDR6 n/a
7 TRCN0000122513 CGCTGGCTTGAGGGAAATATA pLKO.1 622 CDS 100% 15.000 10.500 N WDR6 n/a
8 TRCN0000353745 CAATCGGCATCGGATGGTTAA pLKO_005 2799 CDS 100% 10.800 7.560 N WDR6 n/a
9 TRCN0000143436 GTGCTATATGACCCTGTAGTA pLKO.1 670 CDS 100% 4.950 3.465 N WDR6 n/a
10 TRCN0000143649 CTTTGTGAACATTCCCAGGTA pLKO.1 3883 3UTR 100% 2.640 1.848 N WDR6 n/a
11 TRCN0000139941 GCTTCCTTTGCCTTTACCCTA pLKO.1 4075 3UTR 100% 2.640 1.848 N WDR6 n/a
12 TRCN0000330488 TCCTTTGCCTTTACCCTATAC pLKO_005 4078 3UTR 100% 10.800 6.480 N WDR6 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001320546.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11609 pDONR223 100% 26.3% 26.3% None 1_2418del n/a
2 ccsbBroad304_11609 pLX_304 0% 26.3% 26.3% V5 1_2418del n/a
3 TRCN0000480785 TAGCCACTCCTTATCTACCACACA pLX_317 37.7% 26.3% 26.3% V5 1_2418del n/a
Download CSV