Construct: ORF ccsbBroad304_11630
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014805.1_s304c1, BRDN0000399515
- Derived from:
- ccsbBroadEn_11630
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NLGN4Y (22829)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11630
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001164238.1 | 52.3% | 52.3% | 1_366del |
| 2 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_017030041.1 | 52.3% | 52.3% | 1_366del |
| 3 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365584.1 | 14.7% | 13.1% | (many diffs) |
| 4 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365586.1 | 14.7% | 13.1% | (many diffs) |
| 5 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365588.1 | 14.7% | 13.1% | (many diffs) |
| 6 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_006724874.2 | 14.7% | 13.1% | (many diffs) |
| 7 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531427.2 | 14.7% | 13.1% | (many diffs) |
| 8 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531428.1 | 14.7% | 13.1% | (many diffs) |
| 9 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531429.2 | 14.7% | 13.1% | (many diffs) |
| 10 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531430.2 | 14.7% | 13.1% | (many diffs) |
| 11 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_024452490.1 | 14.7% | 13.1% | (many diffs) |
| 12 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_005274564.3 | 13.9% | 12.1% | (many diffs) |
| 13 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_005274565.2 | 13.9% | 12.1% | (many diffs) |
| 14 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_005274566.4 | 13.9% | 12.1% | (many diffs) |
| 15 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_006724504.3 | 13.9% | 12.1% | (many diffs) |
| 16 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_011545547.2 | 13.9% | 12.1% | (many diffs) |
| 17 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_011545548.2 | 13.9% | 12.1% | (many diffs) |
| 18 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_017030039.1 | 13.2% | 10.7% | (many diffs) |
| 19 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365590.1 | 12.3% | 10.8% | (many diffs) |
| 20 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365591.1 | 12.3% | 10.8% | (many diffs) |
| 21 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365592.1 | 12.3% | 10.8% | (many diffs) |
| 22 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365593.1 | 12.3% | 10.8% | (many diffs) |
| 23 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_014893.4 | 12.3% | 10.8% | (many diffs) |
| 24 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_017030036.1 | 12.3% | 10.8% | (many diffs) |
| 25 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_001282145.2 | 11.8% | 10.3% | (many diffs) |
| 26 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_001282146.1 | 11.8% | 10.3% | (many diffs) |
| 27 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_020742.3 | 11.8% | 10.3% | (many diffs) |
| 28 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_181332.3 | 11.8% | 10.3% | (many diffs) |
| 29 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_017029691.1 | 11.8% | 10.3% | (many diffs) |
| 30 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_017029692.1 | 11.8% | 10.3% | (many diffs) |
| 31 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_017029693.1 | 11.8% | 10.3% | (many diffs) |
| 32 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NR_046355.1 | 6.8% | (many diffs) | |
| 33 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NR_028319.1 | 5.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 468
- ORF length:
- 402
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgct gcccatctgg tttaccacca gtttggatac tttgatgacc tatgttcaag 121 atcaaaatga agactgcctt tacttaaaca tctatgtgcc catggaagat ggaaccaaca 181 taaagagaaa tgcagacgat ataaccagta atgaccatgg tgaagataaa gatattcatg 241 aacagaacag taagaagcct gttatggtct atatccatgg gggatcttac atggagggaa 301 ccggtaacat gattgatggc agcattttgg ccagctatgg gaacgtcatc gttatcacca 361 ttaactaccg tctgggaata ctaggtatgc aagaggcacg tttgtgtggg agctcaaaaa 421 tgtttaatta ttttaaatct cctttcacta atttaataaa ttttttttgc ccaactttct 481 tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt 541 aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta