Construct: ORF ccsbBroad304_11683

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015623.1_s304c1, BRDN0000402662
Derived from:
ccsbBroadEn_11683
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPB41L3 (23136)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11683
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025660.2 16.1% 16.1% 364_2250del
2 human 23136 EPB41L3 erythrocyte membrane protei... NM_001281535.1 16% 16% 364_2268del
3 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025659.2 16% 16% 364_2268del
4 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025658.2 15.8% 15.8% 364_2292del
5 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025657.2 15.7% 15.7% 364_2304del
6 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025656.2 15.6% 15.6% 364_2322del
7 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025655.2 15.5% 15.5% 364_2337del
8 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025654.2 15.4% 15.4% 364_2346del
9 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025653.2 15.3% 15.3% 364_2367del
10 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025652.2 15.2% 15.2% 364_2373del
11 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025651.2 15.1% 15.1% 364_2391del
12 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025650.2 14.9% 14.9% 364_2421del
13 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025648.2 14.9% 14.9% 364_2427del
14 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025649.2 14.8% 14.8% 364_2448del
15 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025641.2 14.7% 14.7% 1_327del;691_2460del
16 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025647.2 14.7% 14.7% 364_2466del
17 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025638.2 14.5% 14.5% 1_327del;691_2490del
18 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025645.2 14.5% 14.5% 364_2502del
19 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025646.2 14.4% 14.4% 1_327del;691_2514del
20 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025634.2 14.3% 14.3% 1_327del;691_2526del
21 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025635.2 14.3% 14.3% 1_327del;691_2526del
22 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525637.3 14.2% 14.2% 1_327del;691_2541del
23 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025644.2 14.2% 14.2% 1_327del;691_2541del
24 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025643.2 14.2% 14.2% 1_327del;691_2550del
25 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025631.2 14.1% 14.1% 1_327del;691_2559del
26 human 23136 EPB41L3 erythrocyte membrane protei... NM_001281534.2 13.9% 13.9% 1_327del;691_2595del
27 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025642.2 13.9% 13.9% 1_327del;691_2595del
28 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025640.2 13.9% 13.9% 1_327del;691_2607del
29 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025626.2 13.8% 13.8% 1_327del;691_2613del
30 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025639.2 13.8% 13.8% 1_327del;691_2619del
31 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025624.2 13.8% 13.8% 1_327del;691_2625del
32 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025637.2 13.7% 13.7% 1_327del;691_2631del
33 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025623.2 13.7% 13.7% 1_327del;691_2637del
34 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525634.3 13.7% 13.7% 1_327del;691_2643del
35 human 23136 EPB41L3 erythrocyte membrane protei... NM_001281533.1 13.7% 13.7% 1_327del;691_2649del
36 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025636.2 13.7% 13.7% 1_327del;691_2649del
37 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025621.2 13.6% 13.6% 1_327del;691_2664del
38 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025620.2 13.5% 13.5% 1_327del;691_2670del
39 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025632.2 13.5% 13.5% 1_327del;691_2673del
40 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025633.2 13.5% 13.5% 1_327del;691_2673del
41 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025619.2 13.5% 13.5% 1_327del;691_2688del
42 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025629.2 13.4% 13.4% 1_327del;691_2700del
43 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025630.2 13.4% 13.4% 1_327del;691_2700del
44 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525632.3 13.4% 13.4% 1_327del;691_2706del
45 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025618.2 13.3% 13.3% 1_327del;691_2712del
46 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025628.2 13.3% 13.3% 1_327del;691_2718del
47 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025627.2 13.2% 13.2% 1_327del;691_2748del
48 human 23136 EPB41L3 erythrocyte membrane protei... NM_001330557.1 13.1% 13.1% 1_327del;691_2754del
49 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025625.2 13.1% 13.1% 1_327del;691_2754del
50 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025622.2 13% 13% 1_327del;691_2775del
51 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525626.3 12.9% 12.9% 1_327del;691_2793del
52 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525623.3 12.8% 12.8% 1_327del;691_2829del
53 human 23136 EPB41L3 erythrocyte membrane protei... NM_012307.4 11.1% 11.1% 1_327del;691_3261del
54 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249495.1 13.7% 15.4% (many diffs)
55 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355732.1 13.1% 14.7% (many diffs)
56 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246290.1 12.8% 14.4% (many diffs)
57 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317239.2 12.8% 14.4% (many diffs)
58 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249494.1 12.7% 14.2% (many diffs)
59 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249486.1 12.5% 14% (many diffs)
60 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249492.1 12.4% 13.9% (many diffs)
61 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249491.1 12.2% 13.6% (many diffs)
62 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246288.1 12.1% 13.6% (many diffs)
63 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317238.1 11.9% 13.3% (many diffs)
64 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249490.1 11.9% 13.3% (many diffs)
65 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249489.1 11.8% 13.2% (many diffs)
66 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249488.1 11.7% 13.1% (many diffs)
67 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249484.1 11.7% 13.1% (many diffs)
68 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249487.1 11.7% 13% (many diffs)
69 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317234.1 11.6% 13% (many diffs)
70 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317232.1 11.5% 12.8% (many diffs)
71 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355733.1 11.4% 12.8% (many diffs)
72 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249485.1 11.4% 12.8% (many diffs)
73 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249483.1 11.4% 12.7% (many diffs)
74 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355736.1 11.2% 12.5% (many diffs)
75 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_013813.2 11.2% 12.5% (many diffs)
76 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249481.1 11.1% 12.5% (many diffs)
77 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317231.1 11.1% 12.4% (many diffs)
78 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249480.1 11% 12.3% (many diffs)
79 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249479.1 10.9% 12.2% (many diffs)
80 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246285.1 10.5% 11.8% (many diffs)
81 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249482.1 10.5% 11.8% (many diffs)
82 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249478.1 9.9% 11.1% (many diffs)
83 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246284.1 9.9% 11.1% (many diffs)
84 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249477.1 9.7% 10.9% (many diffs)
85 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246283.1 9.6% 10.7% (many diffs)
86 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355735.1 9.6% 10.7% (many diffs)
87 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246281.1 9.5% 10.7% (many diffs)
88 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249476.1 9.5% 10.7% (many diffs)
89 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355734.1 9.4% 10.5% (many diffs)
90 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249475.1 9.3% 10.4% (many diffs)
91 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246279.1 9.2% 10.3% (many diffs)
92 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246278.1 9% 10.1% (many diffs)
93 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249474.1 8.1% 9% (many diffs)
94 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523618.4 8% 8.9% (many diffs)
95 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317227.2 7.4% 8.3% (many diffs)
96 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249472.1 7.4% 8.3% (many diffs)
97 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249473.1 7.4% 8.3% (many diffs)
98 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523612.4 7.3% 8.2% (many diffs)
99 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523613.3 7.3% 8.2% (many diffs)
100 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523614.4 7.3% 8.2% (many diffs)
101 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523615.3 7.3% 8.2% (many diffs)
102 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523616.4 7.3% 8.2% (many diffs)
103 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523611.4 7.2% 8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
429
ORF length:
363
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca gtgcaaagtg atacttctcg atggatcaga atatacctgt gatgtagaga
121aacgctccag aggacaagtg ctgtttgata aagtgtgtga acacttgaac ttgctagaga
181aagactactt tgggcttacg tatcgagatg ctgaaaacca gaagaattgg ttggaccctg
241ctaaggaaat aaaaaaacag gttcgaagtg gtgcttggca cttttcattt aatgtgaaat
301tttatccacc agaccctgcc caactatctg aagatatcac caggtactac ctctgcttgc
361agttgcgaga tgacatcgtg tccggaaggc tgccctgctc ctttgttacc ctggccttgc
421tgggctccta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
481tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
541tcaacctctg gatta

Download FASTA (ORF) (Full)