Construct: ORF ccsbBroad304_11725

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001493.1_s304c1, BRDN0000411698
Derived from:
ccsbBroadEn_11725
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
U2SURP (23350)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11725
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23350 U2SURP U2 snRNP associated SURP do... NM_001320220.2 99.9% 100% 78A>T
2 human 23350 U2SURP U2 snRNP associated SURP do... XM_017006038.1 99.9% 100% 78A>T
3 human 23350 U2SURP U2 snRNP associated SURP do... XM_017006039.1 99.9% 100% 78A>T
4 human 23350 U2SURP U2 snRNP associated SURP do... NM_001320222.2 96% 96.1% 0_1ins72;6A>T
5 human 23350 U2SURP U2 snRNP associated SURP do... XM_024453425.1 79% 77.4% 1_448del;493_536del;570A>T
6 human 23350 U2SURP U2 snRNP associated SURP do... NM_001320219.2 60.2% 59% 1_1180del;1225_1268del;1302A>T
7 human 23350 U2SURP U2 snRNP associated SURP do... NM_001080415.2 60.2% 58.9% 1_1183del;1228_1271del;1305A>T
8 human 23350 U2SURP U2 snRNP associated SURP do... XM_005247248.5 54.4% 53.2% (many diffs)
9 mouse 67958 U2surp U2 snRNP-associated SURP do... XM_017313543.1 91.5% 98.7% (many diffs)
10 mouse 67958 U2surp U2 snRNP-associated SURP do... XM_017313544.1 91.5% 98.7% (many diffs)
11 mouse 67958 U2surp U2 snRNP-associated SURP do... XM_017313545.1 91.5% 98.7% (many diffs)
12 mouse 67958 U2surp U2 snRNP-associated SURP do... XM_017313542.1 57.6% 61.2% (many diffs)
13 mouse 67958 U2surp U2 snRNP-associated SURP do... NM_026476.2 57.5% 61.2% (many diffs)
14 mouse 67958 U2surp U2 snRNP-associated SURP do... XM_006511384.3 55.1% 58.6% (many diffs)
15 mouse 67958 U2surp U2 snRNP-associated SURP do... NM_001114977.1 55.1% 58.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1929
ORF length:
1860
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gctcctatgt taccgccacc taaaaacaaa gaggattttg agaaggaatt
121tgctcgccct gatacatcga atgattgagt ttgttgtacg tgaagggcca atgtttgaag
181ctatgattat gaacagagaa atcaacaatc ctatgttcag gttcttattt gaaaaccaga
241caccagccca tgtttactat aggtggaagc tttattctat tctgcaggga gattctccaa
301ctaaatggcg gacggaagat tttcgtatgt tcaaaaatgg atctttttgg aggccaccac
361cattaaatcc gtacttgcat ggaatgtcag aagagcaaga aacagaagct tttgtagagg
421aacctagtaa aaagggagca cttaaggaag aacagaggga taaattggaa gaaatcttgc
481ggggattaac tccaaggaaa aatgatattg gagatgcaat ggttttctgt cttaataatg
541ctgaagctgc tgaagaaata gtggattgca ttactgagtc gttgtccatc ttaaagacac
601cccttcctaa aaagattgcc agattatatt tggtttctga tgttttgtac aactcttcag
661ccaaagttgc taatgcttca tattatagaa aattttttga aacaaagtta tgtcagatat
721tttcagacct caatgccacc tatcgtacaa ttcaaggcca tttacaatct gaaaacttta
781agcaacgggt aatgacttgc ttcagagcat gggaagattg ggcaatttat ccagaaccat
841ttttgatcaa actacaaaat attttcttag gacttgtaaa tattattgaa gaaaaggaaa
901cagaggatgt tccagatgac cttgatggtg cccccatcga ggaagagctt gatggtgcac
961ctctggaaga tgtagatgga attcctattg atgctactcc catcgatgat cttgatggag
1021tccctataaa aagtcttgat gatgatcttg atggagtgcc tttggatgca actgaagact
1081caaaaaagaa tgagcctata tttaaagttg ccccatcaaa atgggaagct gtggatgaat
1141ctgaattgga agcacaggct gttacaactt ctaaatggga attatttgac cagcatgaag
1201aatcagaaga agaagaaaat caaaatcaag aagaagaaag tgaagatgaa gaagatactc
1261aaagttccaa atctgaagaa catcatttgt actctaatcc aatcaaagaa gaaatgactg
1321agtctaagtt ctctaagtac tctgaaatga gtgaggaaaa acgagccaaa cttcgtgaaa
1381ttgagctcaa agttatgaag tttcaggatg aattggaatc tgggaaaaga cctaaaaaac
1441caggccagag ttttcaggag caagtagaac actacagaga taaacttctt caacgagaga
1501aagagaaaga gttagaaaga gaacgagaaa gagacaagaa agataaagaa aaattggaat
1561ctcgctccaa agacaagaag gaaaaagatg agtgtactcc gacaaggaag gaaaggaaga
1621ggcgacacag tacatccccc agcccatctc gcagtagcag tggtagacga gtgaaatccc
1681catcaccaaa atcggagcga tcagagcgtt cagaaagatc tcataaagag agctcacggt
1741ccaggtcatc tcacaaagat tctcctagag atgttagcaa aaaagccaaa agatcaccat
1801ctggttcaag gacacctaaa aggtctaggc gatcacggtc tagatctcct aaaaaatcag
1861gaaagaagtc cagatcccag tccagatctc cacacaggtc tcataaaaag tcaaagaaaa
1921acaaacactt gccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
1981tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
2041tcaacctctg gatta

Download FASTA (ORF) (Full)

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